For accurate comprehension of Table S3, here we provide beRBP's Random Forest prediction scores (fractions of voting trees) together with experimental evidence for our whole-transcriptome scannings regarding 26 RBPs from Table S3. AUCs and AUPRCs reported in Table S3 can be reproduced from the provided data.
The file includes a matrix of 55,935 rows and 51 columns. The number of 55,935 coincides with the same total from file ../TabS2/UTR3_hg19.fasta. Fifty-one columns are divided into 17 three-columned groups, each specific to one of the 17 RBPs from Table S3. In every triplet column set, the 1st and 2nd columns give the prediction scores by Specific model ("sScore") and General model ("gScore"), respectively; the 3rd column indicates if the 3'-UTR sequence is supported by eCLIP (MID: 27018577) or AURA (aura.science.unitn.it/; v2.0). To calculate the whole-transcriptome metrics (Table S3, columns noted with "on whole eCLIP data"), all UTRs annotated with "eCLIP" or "eCLIP,AURA" were regarded as TRUE while others as FALSE; to calculate the AURA-exempt metrics (Table S3, columns noted with "on AURA-excluded eCLIP data"), UTRs annotated with "eCLIP, AURA" and "AURA" were removed.   