For accurate comprehension of Table S4, here we provide beRBP's Random Forest prediction scores (fractions of voting trees) together with the eCLIP evidence for whole-transcriptome scanning regarding the nine novel RBPs from Table S4. AUCs and AUPRCs reported in Table S4 can be reproduced from the provided data.
The file includes a matrix of 55,935 rows and 18 columns. The number of 55,935 coincides with the same total from file ../TabS2/UTR3_hg19.fasta. Eighteen columns are divided into nine two-columned groups, each specific to one of the 9 RBPs from Table S4. In every group of columns, the two columns give the prediction scores by the General model ("gScore") and the evidence from eCLIP (MID: 27018577), respectively. Please note that 2237 UTRs have NA values for SF3B4, due to an unexpected abort of a job handling a subset of UTRs. Thus SF3B4 results were summarized over 53,698 UTRs, different from the total 55,935 for all other 8 RBPs. Compared to the similarly formatted matrix for Table S3, here each UTR is annotated with either "eCLIP" or null, since these nine RBPs had no data in AURA.