beRBP: Binding Estimation for human RNA-Binding Proteins

beRBP is an approach to predict RBP-RNA interaction given a RBP characterized by position weight matrices (PWMs) and one RNA sequence (See Methodology).

Step 1. RBP:PWM(s) Model

       Specific model help

       General model help

  Pre-built PWMs click here to select. help


RBPMotif
A1CF
alternate text
A2BP1
alternate text alternate text
ACO1
alternate text
ANKHD1
alternate text
ANKRD17
alternate text
BRUNOL4
alternate text
BRUNOL5
alternate text
BRUNOL6
alternate text
CELF3
alternate text alternate text alternate text alternate text alternate text
CIRBP
alternate text
CNOT4
alternate text
CPEB2
alternate text
CPEB3
alternate text alternate text alternate text
CPEB4
alternate text
CSDA
alternate text alternate text alternate text alternate text alternate text
alternate text
DAZAP1
alternate text
EIF2S1
alternate text
EIF4B
alternate text alternate text alternate text
ELAVL1
alternate text alternate text alternate text alternate text alternate text
ELAVL2
alternate text alternate text alternate text
ELAVL3
alternate text alternate text alternate text alternate text alternate text
alternate text alternate text alternate text alternate text
ENOX1
alternate text
ENOX2
alternate text
ESRP1
alternate text
ESRP2
alternate text
FMR1
alternate text
FUS
alternate text
Fusip1
alternate text alternate text alternate text alternate text
FXR1
alternate text
FXR2
alternate text
G3BP2
alternate text
HNRNPA1
alternate text alternate text
HNRNPA1L2
alternate text
HNRNPA2B1
alternate text
HNRNPA3
alternate text alternate text alternate text alternate text
HNRNPC
alternate text
HNRNPCL1
alternate text
HNRNPF
alternate text
HNRNPH1
alternate text
HNRNPH2
alternate text
hnRNPK
alternate text
HNRNPL
alternate text alternate text
hnRNPLL
alternate text
HNRNPR
alternate text alternate text alternate text
HNRPDL
alternate text
IGF2BP1
alternate text
IGF2BP2
alternate text
IGF2BP3
alternate text
KHDRBS1
alternate text
KHDRBS2
alternate text
KHDRBS3
alternate text
LIN28A
alternate text alternate text
LIN28B
alternate text alternate text
MATR3
alternate text
MBNL1
alternate text alternate text
MBNL2
alternate text alternate text
MBNL3
alternate text alternate text
MEX3B
alternate text
MEX3C
alternate text
MEX3D
alternate text
MSI1
alternate text alternate text
MSI2
alternate text alternate text
NCL
alternate text
NONO
alternate text
NOVA2
alternate text alternate text
PABPC1
alternate text alternate text alternate text
PABPC1L
alternate text alternate text alternate text alternate text alternate text
PABPC3
alternate text
PABPC4
alternate text
PABPC5
alternate text
PABPN1
alternate text
PABPN1L
alternate text
PCBP1
alternate text
PCBP2
alternate text
PCBP3
alternate text alternate text alternate text alternate text alternate text
PCBP4
alternate text alternate text alternate text alternate text alternate text
PPRC1
alternate text
PSPC1
alternate text
PTBP1
alternate text alternate text
PTBP2
alternate text alternate text
QKI
alternate text alternate text
RALY
alternate text
RBFOX2
alternate text alternate text alternate text alternate text alternate text
RBFOX3
alternate text alternate text alternate text alternate text alternate text
RBM24
alternate text
RBM28
alternate text
RBM3
alternate text
RBM38
alternate text alternate text alternate text alternate text alternate text
RBM4
alternate text alternate text
RBM41
alternate text
RBM42
alternate text
RBM45
alternate text
RBM46
alternate text
RBM47
alternate text alternate text alternate text
RBM4B
alternate text alternate text
RBM5
alternate text alternate text
RBM6
alternate text
RBM8A
alternate text
RBMS1
alternate text
RBMS2
alternate text alternate text alternate text
RBMS3
alternate text alternate text
RBMX
alternate text
RBMXL1
alternate text alternate text alternate text
RBMXL2
alternate text alternate text alternate text
RBMXL3
alternate text alternate text alternate text
RBMY1A1
alternate text alternate text
RBMY1B
alternate text alternate text alternate text
RBMY1D
alternate text alternate text alternate text
RBMY1E
alternate text alternate text alternate text
RBMY1F
alternate text alternate text alternate text
RBMY1J
alternate text alternate text alternate text
ROD1
alternate text alternate text
SAMD4A
alternate text
SAMD4B
alternate text
SART3
alternate text
SF3B4
alternate text alternate text alternate text alternate text
SFPQ
alternate text
SNRNP70
alternate text
SNRPA
alternate text alternate text alternate text alternate text alternate text
alternate text alternate text alternate text
SNRPB2
alternate text alternate text alternate text alternate text alternate text
alternate text alternate text alternate text alternate text
SRSF1
alternate text alternate text alternate text alternate text alternate text
alternate text alternate text alternate text alternate text
SRSF12
alternate text alternate text alternate text alternate text
SRSF2
alternate text alternate text alternate text alternate text
SRSF3
alternate text alternate text
SRSF4
alternate text alternate text
SRSF6
alternate text alternate text
SRSF7
alternate text alternate text alternate text
SRSF9
alternate text alternate text alternate text
STAR-PAP
alternate text
SYNCRIP
alternate text alternate text alternate text
TAF15
alternate text
TARDBP
alternate text
TIA1
alternate text alternate text
U2AF2
alternate text
YB-1
alternate text alternate text
YBX2
alternate text
YTHDC1
alternate text
ZC3H10
alternate text
ZCRB1
alternate text
ZFP36
alternate text alternate text
ZFP36L1
alternate text alternate text
ZFP36L2
alternate text alternate text
ZNF638
alternate text

Selected pre-built PWM(s):

  Your own PWM. Upload a PWM in CIS-BP format. sample 1; sample 2 help

  Your RBP sequence to predict PWM(s) (fasta format only for ONE sequence) Example help
    

    


Step 2. RNA sequence(s)

If you have only ONE RNA sequence, please paste it below in fasta format: Example


Or, if you have MULTIPLE RNA sequences, please upload them in a file in fasta format: Example

OPTIONAL

Your E-mail: