Gene Ontology Tree Machine   
http://bioinfo.vanderbilt.edu/gotm
Vanderbilt University
 


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GOTM (GOTree Machine) is a web-based platform for interpreting microarray data or other interesting gene sets using Gene Ontology.

Key features:

  • User friendly web-based interface

  • Expandable tree for browsing the GO hierarchy, Fixed tree as HTML output for archive, Bar chart for publication

  • Statistic analysis indicating GO terms with relatively enriched gene numbers and suggesting biological areas that warrant further study. Sub-tree and DAG visualizing enriched GO categories

  • Retrieving subset of genes by GO term or keyword searching.

Screenshots: [ Schematic overview ] [ Input view ] [ Output view ] [ Text output ] [ DAG output ]


GOTM developed and maintained by Bing Zhang, Stefan Kirov, Denise Schmoyer and Jay Snoddy


Database GeneKeyDB last updated on January 15, 2007


GOTM was supported by
the INIA project (NIH/NIAAA, U01-AA013532)
the BISTI project (NIH/NIDA, P01-DA015027), and
an ORNL LDRD project (DOE, AC05-00OR22725)