Enhancer_ID chr start end center FANTOM5 associated_gene-FANTOM5 associated_gene-50Kb associated_gene-4DGenome Cell/Tissue Detection_method PMID closest_gene distance 1 chr1 101575988 101578865 101577769 Y SLC30A7,SLC30A7,S1PR1 NA SLC30A7,EXTL2 IMR90 Hi-C 24141950 DPH5 84626 2 chr1 101583325 101586142 101584254 N NA NA NA NA NA NA DPH5 91963 3 chr1 101592951 101595256 101594017 N NA NA NA NA NA NA DPH5 101589 4 chr1 101774375 101779122 101776286,101778543 N,N NA;NA NA NA NA NA NA S1PR1 72070 5 chr1 101822445 101823734 101823107 N NA NA NA NA NA NA S1PR1 120140 6 chr1 108592675 108595814 108594322 N NA NA NA NA NA NA VAV3 85130 7 chr1 108621858 108623145 108622369 N NA NA NA NA NA NA VAV3 114313 8 chr1 110344117 110347499 110345915 N NA NA CSF1,AHCYL1 IMR90 Hi-C 24141950 GSTM3 60457 9 chr1 111328578 111331362 111330356 N NA NA KCNA2 IMR90 Hi-C 24141950 KCNA3 110923 10 chr1 111755176 111760257 111757806 Y CEPT1,DENND2D DENND2D,CHI3L2 WDR77,OVGP1,C1orf88,CEPT1,PGCP1,RAP1A,DRAM2 IMR90 Hi-C 24141950 CHI3L2 10024 11 chr1 111762358 111767332 111764386 Y CD53,CD53,RAP1A,CEPT1,CEPT1,DENND2D,CHI3L2 DENND2D,CHI3L2 C1orf88,CEPT1,PGCP1,RAP1A,DRAM2,CHI3L2,WDR77,CHIA IMR90 Hi-C 24141950 CHI3L2 2949 12 chr1 112933314 112934061 112933594 N NA NA MOV10,RHOC,CTTNBP2NL MCF7 ChIA-PET 22265404 ST7L 227979 13 chr1 11412834 11413508 11413073 N NA NA FBXO2,FBXO44,UBIAD1 IMR90 Hi-C 24141950 UBIAD1 79579 14 chr1 114883446 114885794 114884051 N NA NA HIPK1,OLFML3,TRIM33,SYT6 IMR90 Hi-C 24141950 TRIM33 167987 15 chr1 115640728 115643011 115641901 N NA TSPAN2 SYCP1,CASQ2,TSPAN2 IMR90 Hi-C 24141950 TSPAN2 8607 16 chr1 116087306 116091493 116090604,116088519 N,Y NA;NA NA NGF,VANGL1,SYCP1 IMR90 Hi-C 24141950 VANGL1 93081 17 chr1 116710309 116712003 116711184 N NA NA ATP1A1,SLC22A15,CD58,IGSF3 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 ATP1A1 203792 18 chr1 117358390 117360020 117359303 Y TTF2,CD2 NA NA NA NA NA CD2 61304 19 chr1 145395181 145396452 145395649 N NA NA PDE4DIP,SEC22B,HFE2,GNRHR2,LIX1L,RBM8A,PIAS3,POLR3C,NUDT17,ANKRD35,TXNIP,ANKRD34A,POLR3GL,PEX11B,RNF115 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 POLR3GL 73935 20 chr1 14645905 14649336 14647716 N NA NA KAZN IMR90 Hi-C 24141950 PRDM2 619170 21 chr1 147805597 147807562 147807016 Y NA NA NA NA NA NA ACP6 662963 22 chr1 148240913 148242680 148241389 N NA NA NA NA NA NA ACP6 1098279 23 chr1 152019968 152021203 152020573 N NA NA NA NA NA NA S100A10 53254 24 chr1 157622517 157623922 157623000 N NA NA NA NA NA NA KIRREL 339141 25 chr1 158117431 158120877 158119606 Y NA CD1D LOC646268,KIRREL,AIM2 IMR90 Hi-C 24141950 CD1D 28860 26 chr1 161359278 161360681 161359898 Y HSPA6,ATF6,ARHGAP30,FCER1G,FCGR2A NA NR1I3,APOA2,TOMM40L,SDHC,NDUFS2,ADAMTS4,UFC1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 SDHC 75112 27 chr1 161368595 161370966 161369365 Y NA NA ADAMTS4,NDUFS2,APOA2,TOMM40L IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SDHC 84429 28 chr1 161408839 161410691 161410378 N NA NA NDUFS2,DUSP12 IMR90 Hi-C 24141950 SDHC 124673 29 chr1 165566689 165568198 165567552 N NA MGST3 RXRG,LOC400794,UCK2,LOC440700,ALDH9A1 IMR90 Hi-C 24141950 MGST3 31912 30 chr1 166458930 166459987 166459226 N NA NA NA NA NA NA FAM78B 322972 31 chr1 167585648 167588751 167586939 Y POU2F1,POU2F1,CD247,RCSD1 RCSD1 RCSD1 IMR90 Hi-C 24141950 RCSD1 10723 32 chr1 16824958 16826514 16825759 Y NA CROCCP3 SPATA21,NECAP2,CROCCP3,NBPF1,CROCC IMR90 Hi-C 24141950 CROCCP3 5762 33 chr1 168309798 168312351 168311283 N NA NA MIR557,LOC100505918 IMR90 Hi-C 24141950 SFT2D2 114543 34 chr1 17221778 17224243 17222381 N NA CROCC CROCC,NECAP2,CROCCP3,SPATA21,NBPF1,CROCCP2,MST1P2,ESPNP,MIR3675,ATP13A2,SDHB,PADI2,MFAP2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 CROCC 24202 35 chr1 17230172 17233209 17231582 Y PADI4,PADI2 CROCC CROCC,NECAP2,CROCCP3,SPATA21,NBPF1,CROCCP2,MST1P2,ESPNP,MIR3675,ATP13A2,SDHB,PADI2,MFAP2 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 CROCC 15236 36 chr1 173990331 173992868 173991527 N NA RC3H1 ZBTB37,RC3H1,GAS5 IMR90 Hi-C 24141950 RC3H1 28121 37 chr1 17508179 17508779 17508491 N NA NA NBPF1,SDHB,PADI2,PADI1,PADI3,PADI4 IMR90 Hi-C 24141950 SDHB 127514 38 chr1 175177852 175178979 175178435 N NA NA NA NA NA NA MRPS14 185261 39 chr1 181997774 181999742 181998980 Y GLUL,GLUL NA ZNF648 MCF7 ChIA-PET 22265404 GLUL 361599 40 chr1 182227705 182229969 182228491 Y NA NA GLUL K562 ChIA-PET 22265404 GLUL 131372 41 chr1 182269584 182271815 182270635 N NA NA GLUL K562,MCF7 ChIA-PET 22265404 GLUL 89526 42 chr1 198070357 198073289 198071887 N NA NA PTPRC,NEK7 IMR90 Hi-C 24141950 NEK7 52819 43 chr1 198589101 198594016 198590362 Y NEK7,PTPRC PTPRC NA NA NA NA PTPRC 14121 44 chr1 198967773 198977917 198976680 N NA NA NA NA NA NA LOC100131234 61215 45 chr1 198985528 198991784 198988167,198989803 N,N NA;NA NA LOC100131234 IMR90 Hi-C 24141950 LOC100131234 78970 46 chr1 198994776 199016033 199000932,198996243,199007957,199010945,199010227 N,N,N,N,N NA;NA;NA;NA;NA NA LOC100131234 IMR90 Hi-C 24141950 LOC100131234 88218 47 chr1 199127998 199135440 199132777 N NA NA NA NA NA NA LOC100131234 221440 48 chr1 199136656 199148331 199145367 N NA NA NA NA NA NA LOC100131234 230098 49 chr1 199149893 199153503 199151572 N NA NA LOC100131234 IMR90 Hi-C 24141950 LOC100131234 243335 50 chr1 199186474 199192340 199188935 N NA NA LOC100131234 IMR90 Hi-C 24141950 LOC100131234 279916 51 chr1 204462472 204464624 204463586 N NA PIK3C2B,MDM4 PIK3C2B,PPP1R15B,LOC127841 MCF7,K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 PIK3C2B 2998 52 chr1 204475330 204476817 204475977 N NA PIK3C2B,MDM4 PPP1R15B,MDM4,PIK3C2B MCF7,K562 ChIA-PET 22265404 MDM4 8690 53 chr1 206305660 206306573 206306214 N NA C1orf186 PM20D1,C1orf186,MFSD4,NUCKS1,SLC41A1,LOC284581,SLC26A9,AVPR1B,CTSE IMR90 Hi-C 24141950 C1orf186 17013 54 chr1 212428466 212430678 212429843 N NA PPP2R5A DTL,PPP2R5A IMR90 Hi-C 24141950 PPP2R5A 28201 55 chr1 212729386 212732694 212732345 Y NA NA ATF3 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 NENF 123157 56 chr1 213894652 213899841 213896888,213898629 N,N NA;NA NA NA NA NA NA PROX1 262019 57 chr1 213955523 213958078 213956970 N NA NA NA NA NA NA PROX1 203782 58 chr1 222638680 222639344 222639335 N NA NA DUSP10,MIA3,AIDA,BROX IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 TAF1A 123931 59 chr1 224179121 224181070 224180368 Y NA NA NA NA NA NA FBXO28 120721 60 chr1 224200040 224205613 224202153 N NA NA NA NA NA NA FBXO28 96178 61 chr1 225630878 225633957 225632729 N NA LBR TMEM63A,LBR,ENAH,SRP9,EPHX1,PYCR2,LEFTY2,C1orf55 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 LBR 14321 62 chr1 226189219 226190914 226190014 Y H3F3A,C1orf55 C1orf55 NA NA NA NA C1orf55 2153 63 chr1 226297211 226299527 226298017 Y NA H3F3A ACBD3,C1orf55,H3F3A,LIN9 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 H3F3A 46803 64 chr1 226985964 226987002 226986641 N NA NA C1orf95,ITPKB IMR90 Hi-C 24141950 ITPKB 59088 65 chr1 227728523 227731157 227730459 N NA ZNF678 WNT9A,ZNF678 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF678 20063 66 chr1 229000074 229000565 229000388 N NA NA RHOU,NUP133 IMR90 Hi-C 24141950 RNF187 325006 67 chr1 229035656 229037898 229036417 N NA NA RHOU IMR90 Hi-C 24141950 RNF187 360588 68 chr1 229073317 229074679 229074066 N NA NA RHOU IMR90 Hi-C 24141950 RAB4A 332200 69 chr1 229264238 229266727 229265550 N NA NA RHOU,NUP133 IMR90 Hi-C 24141950 RAB4A 140152 70 chr1 229276169 229278755 229277482 N NA NA RHOU,NUP133 IMR90 Hi-C 24141950 RAB4A 128124 71 chr1 229829309 229830475 229830352 N NA NA TAF5L,URB2,GALNT2,PGBD5 IMR90 Hi-C 24141950 URB2 67328 72 chr1 230164965 230165476 230165180 N NA GALNT2 GALNT2,URB2 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 GALNT2 37480 73 chr1 230559931 230561659 230560486 N NA PGBD5 NA NA NA NA PGBD5 46540 74 chr1 232735290 232736518 232735301 N NA NA TSNAX-DISC1 IMR90 Hi-C 24141950 SIPA1L2 84047 75 chr1 232764465 232767564 232765974 Y NA NA TSNAX-DISC1,DISC2,SIPA1L2,PCNXL2 IMR90 Hi-C 24141950 SIPA1L2 113222 76 chr1 233025977 233028473 233027001 N NA NA TSNAX-DISC1,KIAA1383,NTPCR,PCNXL2 IMR90 Hi-C 24141950 NTPCR 57897 77 chr1 233058830 233063210 233059899 N NA NTPCR KIAA1383,PCNXL2,SIPA1L2 IMR90 Hi-C 24141950 NTPCR 23160 78 chr1 234491276 234494156 234492686 N NA C1orf31 TARBP1,SLC35F3 IMR90 Hi-C 24141950 C1orf31 15058 79 chr1 234634181 234636340 234634974 N NA TARBP1 LOC100506810,RBM34,IRF2BP2,LINC00184,LOC100506795 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 TARBP1 19332 80 chr1 234639857 234642614 234641007 N NA TARBP1 LOC100506810,RBM34,IRF2BP2,LINC00184,LOC100506795 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TARBP1 25008 81 chr1 234693730 234696136 234694375 N NA IRF2BP2 LOC100506795,TARBP1,IRF2BP2,LOC100506810,TOMM20,RBM34,ARID4B IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 IRF2BP2 49135 82 chr1 234747418 234749515 234748525 Y IRF2BP2 IRF2BP2 LINC00184,LOC100506810,ARID4B IMR90 Hi-C 24141950 IRF2BP2 2147 83 chr1 234907253 234908809 234908077 N NA LOC100506810 LOC100506810,IRF2BP2,LOC100506795,LINC00184,TOMM20,RBM34 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC100506810 47464 84 chr1 235097695 235100373 235098542 N NA NA IRF2BP2,LOC100506810,LINC00184,TARBP1,LOC100506795 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TOMM20 191883 85 chr1 235146412 235148906 235147749 N NA NA LINC00184,TARBP1,LOC100506795,IRF2BP2,LOC100506810 IMR90 Hi-C 24141950 TOMM20 143350 86 chr1 23945077 23947098 23946278 N NA NA E2F2,MDS2,ID3,RPL11 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ID3 58792 87 chr1 244013012 244015280 244013870 N NA NA LOC339529 IMR90 Hi-C 24141950 ZNF238 199281 88 chr1 245081783 245082953 245082253 Y EFCAB2 NA SMYD3,EFCAB2,C1orf101,HNRNPU,PPPDE1,COX20 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 HNRNPU 53956 89 chr1 249167246 249169066 249168286 N NA SH3BP5L,ZNF672,ZNF692,PGBD2 ZNF692,PGBD2,MIR3124,SH3BP5L K562,MCF7 ChIA-PET 22265404 ZNF692 13931 90 chr1 25323469 25325173 25324263 N NA RUNX3 RUNX3 IMR90 Hi-C 24141950 RUNX3 31968 91 chr1 25348285 25350027 25349255 N NA NA RUNX3,CLIC4 IMR90 Hi-C 24141950 RUNX3 56784 92 chr1 26248808 26249924 26249193 Y EXTL1,STMN1,STMN1,STMN1 STMN1 STMN1,PAFAH2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 STMN1 15815 93 chr1 26945687 26949212 26947796 Y SH3BGRL3,UBXN11,UBXN11,ZDHHC18,PIGV,GPATCH3,ARID1A,RPS6KA1 NA RPS6KA1,ARID1A,GPN2,GPATCH3,ZDHHC18,DHDDS,HMGN2,SFN,PIGV,NUDC,NR0B2,C1orf172 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ARID1A 73310 94 chr1 31627019 31629456 31627862 Y SDC3,HCRTR1,NKAIN1 NA SNRNP40,PUM1,NKAIN1,SERINC2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 PUM1 88455 95 chr1 31866920 31868056 31867693 N NA SERINC2 ZCCHC17,FABP3,SERINC2,LOC284551 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SERINC2 14356 96 chr1 32291703 32293280 32292862 N NA NA SPOCD1,PTP4A2,KHDRBS1 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 BAI2 62055 97 chr1 32313542 32315245 32314315 Y LCK NA PTP4A2,KHDRBS1,SPOCD1 IMR90 Hi-C 24141950 BAI2 83894 98 chr1 32407397 32411579 32410099,32407962 N,N NA;NA PTP4A2 KHDRBS1,SPOCD1 IMR90 Hi-C 24141950 PTP4A2 3409 99 chr1 32423152 32424247 32423581 N NA PTP4A2 SPOCD1,KHDRBS1,PTP4A2,TINAGL1,COL16A1,PEF1,BAI2,TMEM39B IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PTP4A2 19164 100 chr1 32450125 32451847 32450810 N NA PTP4A2,KHDRBS1 SPOCD1,KHDRBS1,BAI2,COL16A1,TMEM39B,PTP4A2 IMR90 Hi-C 24141950 KHDRBS1 27644 101 chr1 38474124 38475616 38475193 N NA SF3A3,FHL3,UTP11L NA NA NA NA UTP11L 2768 102 chr1 41830564 41833627 41831968 N NA NA NA NA NA NA SCMH1 122749 103 chr1 42499275 42502514 42501624 N NA NA HIVEP3,CCDC30 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 HIVEP3 114897 104 chr1 46008516 46010456 46009687 Y IPP,GPBP1L1,TOE1,TESK2 CCDC163P,MMACHC,PRDX1,AKR1A1,NASP PRDX1,AKR1A1,NASP,CCDC17 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 AKR1A1 5999 105 chr1 46931828 46932720 46932359 N NA NA NA NA NA NA NSUN4 125979 106 chr1 53833490 53834960 53833826 N NA LRP8 GLIS1,LRP8,FLJ40434,YIPF1,LOC100507564,MAGOH,TMEM48 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 LRP8 39669 107 chr1 54939741 54944094 54941853 Y NA NA TMEM59,TCEANC2,SSBP3,CYB5RL,MRPL37,CDCP2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 SSBP3 67649 108 chr1 54952543 54956966 54954631 N NA NA TCEANC2,SSBP3,TMEM59,MRPL37,CYB5RL,CDCP2,C1orf177,YIPF1,DIO1,HSPB11,HEATR8-TTC4 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 SSBP3 80451 109 chr1 54964506 54966011 54965394 Y NA NA TCEANC2,SSBP3,MRPL37,CYB5RL,CDCP2,YIPF1,TMEM59,HSPB11,HEATR8-TTC4,ACOT11,FAM151A IMR90 Hi-C 24141950 SSBP3 92414 110 chr1 55007573 55008495 55007961 N NA NA NA NA NA NA SSBP3 135481 111 chr1 55828202 55830399 55829190 N NA NA PPAP2B,PRKAA2,C1orf168 IMR90 Hi-C 24141950 LOC100507634 147121 112 chr1 55928942 55930286 55929825 N NA NA PPAP2B,PRKAA2 IMR90 Hi-C 24141950 LOC100507634 247861 113 chr1 56571679 56573038 56572504 N NA NA PPAP2B IMR90 Hi-C 24141950 LOC100507634 890598 114 chr1 58857253 58858596 58858050 N NA NA NA NA NA NA OMA1 153850 115 chr1 59220793 59221726 59221412 Y NA JUN FGGY,HSD52,LOC100131060,JUN,MIR4711 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 JUN 28059 116 chr1 59536938 59537814 59536989 N NA NA MIR4711,FGGY,JUN,LOC100131060,HSD52 IMR90 Hi-C 24141950 JUN 287153 117 chr1 59542850 59544873 59543971 N NA NA MIR4711,FGGY,JUN,LOC100131060,HSD52 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 JUN 293065 118 chr1 61298820 61299671 61299187 N NA NA NA NA NA NA NFIA 243275 119 chr1 65531890 65534926 65533701 N NA NA AK4,DNAJC6,LEPR,JAK1 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 JAK1 99703 120 chr1 65719623 65721814 65720065 N NA DNAJC6 DNAJC6,AK4 K562 ChIA-PET 22265404 DNAJC6 8616 121 chr1 723188 727827 725182 N NA LOC643837 NA NA NA NA LOC643837 35237 122 chr1 76181801 76187377 76186666 N NA ACADM ACADM MCF7 ChIA-PET 22265404 ACADM 2666 123 chr1 90222131 90224545 90223261,90223258 Y,Y NA;NA NA LRRC8C,FLJ27354,LRRC8D IMR90 Hi-C 24141950 LRRC8D 62028 124 chr1 90246160 90248572 90247370 N NA LRRC8D FLJ27354,LRRC8C,GEMIN8P4,ZNF326 IMR90 Hi-C 24141950 LRRC8D 38001 125 chr1 91276163 91278275 91276934 N NA NA NA NA NA NA BARHL2 93369 126 chr1 91314913 91317834 91317290 N NA NA NA NA NA NA BARHL2 132119 127 chr1 94215130 94216502 94215682 N NA NA BCAR3,MIR760,FNBP1L IMR90 Hi-C 24141950 DNTTIP2 128260 128 chr1 9459093 9461219 9460522 N NA NA SLC25A33,SPSB1,H6PD IMR90 Hi-C 24141950 SPSB1 106152 129 chr1 9472930 9474706 9473566 N NA NA SPSB1,H6PD,SLC25A33 IMR90 Hi-C 24141950 SPSB1 119989 130 chr1 9488433 9490333 9489057 Y NA NA H6PD,SPSB1,SLC25A33,MIR34A,GPR157 IMR90 Hi-C 24141950 SLC25A33 109195 131 chr10 102413498 102416052 102414861 N NA NA PAX2,FAM178A IMR90 Hi-C 24141950 HIF1AN 117857 132 chr10 102636466 102637403 102636555 N NA FAM178A HIF1AN,PKD2L1,PAX2,FAM178A,WNT8B,SEC31B,NDUFB8 IMR90 Hi-C 24141950 FAM178A 34923 133 chr10 116557431 116562618 116561271 Y NA FAM160B1 AFAP1L2,ABLIM1 IMR90 Hi-C 24141950 FAM160B1 18885 134 chr10 11726639 11727712 11727060 N NA NA USP6NL IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 USP6NL 72960 135 chr10 118594554 118596647 118595850 N NA NA KCNK18,VAX1,MIR3663,C10orf82,ENO4 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 KIAA1598 168441 136 chr10 121887019 121887796 121887522 N NA NA NA NA NA NA SEC23IP 234934 137 chr10 125000759 125001887 125001439 N NA NA NA NA NA NA BUB3 86999 138 chr10 125308020 125311357 125309963 N NA NA ACADSB IMR90 Hi-C 24141950 BUB3 394260 139 chr10 126042445 126044039 126043634 N NA NA CHST15,OAT IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 OAT 63506 140 chr10 126604090 126606612 126605395 N NA ZRANB1 ZRANB1,CTBP2,METTL10 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ZRANB1 24080 141 chr10 129946863 129949053 129948482 Y NA MKI67 FAM196A,DOCK1,CLRN3,PTPRE,MKI67,GLRX3 IMR90 Hi-C 24141950 MKI67 22395 142 chr10 129985605 129986503 129985900 N NA NA NA NA NA NA MKI67 61137 143 chr10 22517822 22519046 22518285 N NA NA COMMD3-BMI1,LOC100499489,PIP4K2A,ARMC3,MSRB2,LOC100130992,DNAJC1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 COMMD3-BMI1 86266 144 chr10 2926373 2930114 2927920,2929935 N,N NA;NA NA LINC00200 IMR90 Hi-C 24141950 PFKP 179598 145 chr10 2931482 2934666 2933662 N NA NA LINC00200 IMR90 Hi-C 24141950 PFKP 175046 146 chr10 2936910 2940836 2940021 Y NA NA LINC00200 IMR90 Hi-C 24141950 PFKP 168876 147 chr10 2950142 2955996 2951256,2954363 Y,N NA;NA NA LINC00200,ADARB2 IMR90 Hi-C 24141950 PFKP 153716 148 chr10 30818132 30819394 30818703 Y MAP3K8,ZNF438 NA MAP3K8,KIAA1462,MTPAP,LOC729668,LYZL2 IMR90 Hi-C 24141950 MTPAP 179865 149 chr10 30992737 30995316 30994083 N NA NA ZEB1,ARHGAP12,ZEB1-AS1 IMR90 Hi-C 24141950 ZNF438 325550 150 chr10 31422020 31427052 31422797,31426198 Y,N ZNF438,ZNF438;NA NA ARHGAP12,ZEB1,ZNF438,ZEB1-AS1 IMR90 Hi-C 24141950 ZNF438 101154 151 chr10 31434596 31436733 31435370 N NA NA ARHGAP12,ZEB1,ZNF438,ZEB1-AS1 IMR90 Hi-C 24141950 ZNF438 113730 152 chr10 32048683 32050243 32049153 Y ZEB1,KIF5B NA ZNF438,ZEB1,ARHGAP12,LYZL2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ARHGAP12 167527 153 chr10 32733874 32736384 32735081 N NA NA C10orf68 MCF7 ChIA-PET 22265404 EPC1 97761 154 chr10 33261337 33262348 33261662 N NA ITGB1 ITGB1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ITGB1 14044 155 chr10 35155770 35156343 35156080 N NA NA CUL2,PARD3 IMR90 Hi-C 24141950 PARD3 51517 156 chr10 35157578 35159134 35158295 N NA NA CUL2,PARD3 IMR90 Hi-C 24141950 PARD3 53325 157 chr10 43856904 43858796 43857770 N NA HNRNPF FXYD4,HNRNPF,ZNF487P MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 HNRNPF 45900 158 chr10 43915035 43917463 43916256 N NA HNRNPF,ZNF487P ZNF487P K562,MCF7 ChIA-PET 22265404 HNRNPF 10339 159 chr10 45242455 45243975 45243251 N NA NA ZNF32-AS3,ZNF32,TMEM72-AS1 IMR90 Hi-C 24141950 RASSF4 211244 160 chr10 47638742 47642389 47640614 N NA NA LOC643650,GPRIN2,PPYR1 IMR90 Hi-C 24141950 ZFAND4 1470491 161 chr10 48473822 48475236 48474244 Y NA NA NA NA NA NA MAPK8 1134451 162 chr10 48610197 48613653 48611819 N NA NA SYT15 IMR90 Hi-C 24141950 MAPK8 996034 163 chr10 49513844 49516200 49514918 N NA NA FRMPD2,ARHGAP22 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 MAPK8 93487 164 chr10 51499388 51501063 51500540 N NA NA NA NA NA NA NCOA4 64045 165 chr10 51517591 51518739 51518399 N NA NCOA4 NA NA NA NA NCOA4 46369 166 chr10 5326111 5327085 5326534 N NA NA tAKR,AKR1E2,AKR1C2,AKR1C3,AKR1C4,AKR1CL1 IMR90 Hi-C 24141950 NET1 127433 167 chr10 5333361 5334805 5334575 Y NA NA AKR1E2,tAKR IMR90 Hi-C 24141950 NET1 119713 168 chr10 5335666 5336810 5336214 Y NA NA AKR1E2,tAKR IMR90 Hi-C 24141950 NET1 117708 169 chr10 6707115 6708459 6708005 N NA NA SFMBT2 IMR90 Hi-C 24141950 LOC439949 84728 170 chr10 69522727 69524927 69524034 Y NA NA NA NA NA NA SIRT1 119500 171 chr10 69608952 69612190 69609259 Y NA SIRT1 SIRT1 K562 ChIA-PET 22265404 SIRT1 32237 172 chr10 6961489 6962970 6962247 N NA NA SFMBT2,LOC100507127 IMR90 Hi-C 24141950 LOC439949 339102 173 chr10 6968026 6971736 6970120 N NA NA SFMBT2,LOC100507127 IMR90 Hi-C 24141950 LOC439949 345639 174 chr10 7015382 7016997 7016133 N NA NA NA NA NA NA LOC439949 392995 175 chr10 73636625 73645995 73638257,73640495 N,N NA;NA PSAP PSAP,CHST3,SPOCK2,ASCC1,ANAPC16,CDH23,DNAJB12 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 PSAP 25543 176 chr10 73647046 73652592 73648841 N NA PSAP PSAP,SPOCK2,DNAJB12,CHST3,CDH23,ASCC1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 PSAP 35964 177 chr10 74019346 74021451 74020716 Y C10orf54,PSAP,DNAJB12,DDIT4 ANAPC16,ASCC1,DDIT4 DNAJB12 K562 ChIA-PET 22265404 DDIT4 12226 178 chr10 74055859 74058940 74057499 Y PSAP,DDIT4,DNAJB12 DDIT4 NA NA NA NA DDIT4 22182 179 chr10 77536441 77537225 77536854 N NA NA NA NA NA NA ZNF503 374928 180 chr10 79936778 79938370 79937773 N NA NA ZMIZ1,LOC283050,RPS24,POLR3A IMR90 Hi-C 24141950 RPS24 143260 181 chr10 80061698 80063540 80062891 N NA NA ZMIZ1,RPS24,LOC283050,LOC100132987,POLR3A IMR90 Hi-C 24141950 RPS24 268180 182 chr10 81741246 81742491 81741707 N NA NA MAT1A IMR90 Hi-C 24141950 LOC642361 155588 183 chr10 8286161 8288277 8287322 N NA NA NA NA NA NA GATA3 189494 184 chr10 8372394 8375579 8374391 Y GATA3 NA NA NA NA NA GATA3 275727 185 chr10 88159046 88163628 88160098 Y NA NA WAPAL MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 WAPAL 117913 186 chr10 89804844 89806669 89805652 N NA NA RNLS,CFL1P1,ATAD1,KLLN,PTEN,LIPF,LIPM IMR90 Hi-C 24141950 PTEN 181649 187 chr10 89821143 89827631 89822284,89824942,89826769 N,N,Y NA;NA;KLLN,PTEN NA RNLS,KLLN,PTEN IMR90 Hi-C 24141950 PTEN 197948 188 chr10 89872988 89876349 89873879 N NA NA PTEN,KLLN,RNLS,CFL1P1,ATAD1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PTEN 249793 189 chr10 92704010 92709484 92704573,92706917 N,N NA;NA NA PCGF5 IMR90 Hi-C 24141950 RPP30 72301 190 chr10 92742666 92750464 92743328 N NA NA PCGF5,ANKRD1 IMR90 Hi-C 24141950 RPP30 110957 191 chr10 92922212 92929165 92923035 N NA NUDT9P1 ANKRD1,PCGF5,RPP30,NUDT9P1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 NUDT9P1 9375 192 chr10 96942971 96944087 96943399 Y SORBS1,SORBS1 NA SORBS1,C10orf129 IMR90 Hi-C 24141950 PDLIM1 106694 193 chr10 976448 978854 977799 N NA LARP4B DIP2C,LARP4B,GTPBP4,IDI2-AS1,IDI1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 LARP4B 44746 194 chr10 97883996 97885404 97884524 N NA ZNF518A LOC728558,CCNJ K562 ChIA-PET 22265404 ZNF518A 4068 195 chr11 104576165 104576945 104576650 Y CARD17,CASP5,CARD16,CASP4,CASP4 NA GRIA4 IMR90 Hi-C 24141950 KIAA1826 1316009 196 chr11 111307120 111308186 111307619 Y POU2AF1 NA LAYN,C11orf53,C11orf92,LOC100132078,ALG9,FDX1,ARHGAP20,C11orf88,C11orf93,MIR4491,POU2AF1 IMR90 Hi-C 24141950 SIK2 164984 197 chr11 112191760 112193867 112192702 N NA NA NA NA NA NA PTS 94672 198 chr11 114645095 114647484 114646221 N NA NA NA NA NA NA REXO2 334987 199 chr11 114649809 114652341 114651144 N NA NA NA NA NA NA REXO2 339701 200 chr11 114652903 114655544 114653955 N NA NA NA NA NA NA REXO2 342795 201 chr11 119454788 119455948 119455185 Y NA NA TRIM29,USP2,LOC100499227 IMR90 Hi-C 24141950 PVRL1 143487 202 chr11 119612870 119615750 119613600 N NA PVRL1 PVRL1,TRIM29 IMR90 Hi-C 24141950 PVRL1 13435 203 chr11 123299770 123302195 123301468 N NA NA CLMP IMR90 Hi-C 24141950 GRAMD1B 94333 204 chr11 123324339 123326117 123325293 N NA NA CLMP,GRAMD1B,HSPA8 IMR90 Hi-C 24141950 GRAMD1B 70411 205 chr11 125953585 125954691 125954063 N NA CDON CDON,FAM118B,RPUSD4 IMR90 Hi-C 24141950 CDON 20398 206 chr11 127908552 127910905 127909697 N NA NA KCNJ1,ETS1 IMR90 Hi-C 24141950 FLI1 652906 207 chr11 128059726 128061170 128060460 N NA NA FLI1,KCNJ1,ETS1,KCNJ5,C11orf45,LOC100507392 IMR90 Hi-C 24141950 FLI1 502641 208 chr11 128171582 128174211 128172723 Y FLI1,FLI1,ETS1 NA ETS1,FLI1,KCNJ1 IMR90 Hi-C 24141950 FLI1 389600 209 chr11 128193166 128195157 128194490 Y FLI1,FLI1,ETS1 NA ETS1,FLI1 IMR90 Hi-C 24141950 FLI1 368654 210 chr11 128290900 128293316 128292714 N NA NA ETS1,FLI1 IMR90 Hi-C 24141950 FLI1 270495 211 chr11 128480177 128482079 128481053 Y ETS1,FLI1,FLI1 NA ETS1 IMR90 Hi-C 24141950 FLI1 81732 212 chr11 128493819 128495316 128494530 N NA NA ETS1,FLI1,KCNJ1 IMR90 Hi-C 24141950 FLI1 68495 213 chr11 129148767 129150833 129149946 Y NA NA ARHGAP32 IMR90 Hi-C 24141950 ARHGAP32 86674 214 chr11 134524032 134530471 134525553 N NA NA LOC283177 IMR90 Hi-C 24141950 B3GAT1 242220 215 chr11 134588844 134591771 134590766 N NA NA NA NA NA NA B3GAT1 307032 216 chr11 134592788 134602510 134594545,134597435 N,N NA;NA NA GLB1L2 IMR90 Hi-C 24141950 B3GAT1 310976 217 chr11 134610768 134613916 134612398 N NA NA GLB1L2,IGSF9B,LOC283177 IMR90 Hi-C 24141950 B3GAT1 328956 218 chr11 1403581 1405302 1404525 Y DUSP8,BRSK2 NA TOLLIP,LOC255512,MUC5B,BRSK2,MOB2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TOLLIP 72689 219 chr11 17227987 17231210 17229567 N NA PIK3C2A NA NA NA NA PIK3C2A 36633 220 chr11 20363754 20364738 20364370 N NA PRMT3 NA NA NA NA PRMT3 44338 221 chr11 21772793 21776039 21774491 N NA NA NA NA NA NA FANCF 871348 222 chr11 3191952 3193775 3192573 N NA OSBPL5 NA NA NA NA OSBPL5 5370 223 chr11 32183675 32185550 32184723 N NA NA ELP4,IMMP1L,PAX6,DKFZp686K1684 IMR90 Hi-C 24141950 RCN1 71198 224 chr11 32592510 32593847 32593338 N NA EIF3M NA NA NA NA EIF3M 11466 225 chr11 355173 357027 355840 N NA NA SIRT3,RIC8A,SCGB1C1,ODF3,BET1L,PSMD13,NLRP6,ATHL1,IFITM1,SIGIRR,ANO9,PKP3,IFITM2 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 SIGIRR 60370 226 chr11 36705696 36712710 36706578,36711275 N,N NA;NA NA NA NA NA NA RAG2 85867 227 chr11 43665190 43667204 43665782 N NA HSD17B12 HSD17B12 IMR90 Hi-C 24141950 HSD17B12 34939 228 chr11 45101409 45102298 45101854 Y TSPAN18 PRDM11 NA NA NA NA PRDM11 13266 229 chr11 45377428 45378175 45377854 N NA NA CHST1,PRDM11,SYT13,EXT2 IMR90 Hi-C 24141950 PRDM11 261864 230 chr11 45406215 45407817 45407258 N NA NA CHST1 IMR90 Hi-C 24141950 PRDM11 290651 231 chr11 46148694 46150000 46148987 N NA PHF21A PHF21A,CREB3L1 IMR90 Hi-C 24141950 PHF21A 5709 232 chr11 46263851 46265348 46265030 Y NA NA DGKZ,PHF21A,CREB3L1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 DGKZ 89107 233 chr11 47415447 47417551 47416426 N NA SLC39A13,PSMC3 SPI1,SLC39A13 K562 ChIA-PET 22265404 SLC39A13 12495 234 chr11 59316954 59319924 59318685 N NA NA PATL1,OSBP K562 ChIA-PET 22265404 OSBP 63693 235 chr11 60809019 60810373 60809902 Y SDHAF2,CD5,CD6 NA CD5,VPS37C,SLC15A3,TMEM132A IMR90 Hi-C 24141950 CD5 59557 236 chr11 60838565 60839651 60838856 N NA CD5 CD5 IMR90 Hi-C 24141950 CD5 30279 237 chr11 64265985 64268766 64267788 N NA NA NRXN2,RASGRP2,PYGM,SLC22A12,SLC22A11 IMR90,HELA,K562 Hi-C,5C 24141950,22955621 SLC22A11 54332 238 chr11 65241694 65246280 65245025 Y BATF2,FAU,CDC42EP2,SIPA1,RELA,MAP3K11,KAT5,EHBP1L1,DKFZp761E198,SLC25A45,FRMD8 MALAT1,SCYL1 SCYL1,SLC25A45,FRMD8,TIGD3,NEAT1,MIR612,MALAT1 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 MALAT1 18953 239 chr11 66495310 66496214 66495877 N NA SPTBN2,C11orf80 C11orf80 MCF7,K562 ChIA-PET 22265404 SPTBN2 6440 240 chr11 66871087 66872174 66871457 N NA KDM2A SPTBN2,PC,SYT12,KDM2A,ADRBK1,SSH3,LOC100130987 IMR90 Hi-C 24141950 KDM2A 14566 241 chr11 67311186 67313022 67312292 N NA PITPNM1,CDK2AP2,GSTP1 GSTP1,AIP,PITPNM1,CDK2AP2,DOC2GP,NDUFV1,NUDT8,TBX10 IMR90 Hi-C 24141950 CDK2AP2 35084 242 chr11 73489437 73491219 73490569 Y UCP2 RAB6A,MRPL48 MRPL48,CHCHD8,PAAF1,RAB6A IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 MRPL48 7698 243 chr11 75945779 75947206 75946754 N NA NA C11orf30,MAP6,UVRAG,PRKRIR,WNT11,GUCY2E,DGAT2 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 PRKRIR 144674 244 chr11 75998486 76000095 75999171 N NA NA MOGAT2,UVRAG,C11orf30,DGAT2 IMR90 Hi-C 24141950 PRKRIR 91785 245 chr11 8288211 8293588 8290133,8292566 N,N NA;NA LMO1 LMO1 IMR90 Hi-C 24141950 LMO1 2805 246 chr11 9384874 9386551 9386020 Y ZNF143,SWAP70,TMEM9B,NRIP3,DENND5A,TMEM41B,IPO7 TMEM41B,IPO7 ZNF143,IPO7,TMEM41B,DENND5A,KRT8P41,SCUBE2,LOC644656 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 IPO7 19618 247 chr11 94987172 94988208 94987622 Y NA SESN3 NA NA NA NA SESN3 22926 248 chr11 9634674 9637080 9635700 Y DENND5A,ZNF143,WEE1,SWAP70 WEE1,SWAP70 WEE1,LOC644656,ZNF143,SBF2,ADM,SWAP70,LOC283104,LOC440028 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 WEE1 39446 249 chr12 10396408 10397233 10396821 N NA GABARAPL1 NA NA NA NA GABARAPL1 30919 250 chr12 10706738 10708815 10707456 Y KLRD1,KLRD1,KLRK1,KLRC4,KLRC4-KLRK1,KLRC3,KLRC2,KLRC1 KLRAP1 CLEC1A,KLRC4-KLRK1 IMR90 Hi-C 24141950 KLRAP1 43619 251 chr12 120728219 120731027 120729761 N NA NA PXN,GCN1L1,LOC100506649,RPLP0,RAB35,SIRT4,CCDC64,DYNLL1,SRSF9,RNF10,COX6A1,PLA2G1B,MSI1,LOC100506668,COQ5,TRIAP1,GATC IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 LOC100506649 89125 252 chr12 121566098 121567224 121566964 N NA NA P2RX4,P2RX7 MCF7,K562 ChIA-PET 22265404 P2RX4 80440 253 chr12 12160525 12164498 12163706 N NA NA ETV6,LOC338817,CDKN1B IMR90 Hi-C 24141950 LRP6 255313 254 chr12 12184425 12186650 12185932 Y ETV6,BCL2L14 NA ETV6,LOC338817,CDKN1B,BCL2L14,MANSC1,LOH12CR2,LOH12CR1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LRP6 233161 255 chr12 122027232 122029376 122028296 N NA KDM2B,ORAI1 KDM2B,ANAPC5,CAMKK2 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 KDM2B 8312 256 chr12 123611927 123618043 123616844 Y ABCB9,MPHOSPH9,C12orf65,C12orf65,C12orf65 PITPNM2 MPHOSPH9,PITPNM2,VPS37B,C12orf65,ABCB9,DENR,CCDC62,HIP1R,OGFOD2,ARL6IP4,LOC100507091,CDK2AP1,SBNO1 IMR90 Hi-C 24141950 PITPNM2 16952 257 chr12 125171576 125172822 125172302 N NA NA NCOR2,ZNF664-FAM101A,SCARB1 IMR90 Hi-C 24141950 NCOR2 119566 258 chr12 125405464 125406954 125406077 N NA UBC NCOR2,SCARB1,UBC IMR90 Hi-C 24141950 UBC 5877 259 chr12 127449087 127452854 127451238 N NA NA NA NA NA NA SLC15A4 1855687 260 chr12 127567658 127568617 127568035 Y NA NA NA NA NA NA SLC15A4 1739924 261 chr12 131073222 131076131 131074420 N NA NA NA NA NA NA STX2 247688 262 chr12 14392120 14393908 14392951 N NA NA ATF7IP,GUCY2C,PLBD1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ATF7IP 124703 263 chr12 14408408 14411833 14410838 Y PLBD1 NA PLBD1,ATF7IP IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ATF7IP 106778 264 chr12 19587220 19587930 19587757 N NA AEBP2 AEBP2 IMR90 Hi-C 24141950 AEBP2 4678 265 chr12 2144004 2145047 2144361 N NA DCP1B CACNA1C,MIR3649,CACNA2D4,ADIPOR2,DCP1B,LOC100652846,WNT5B IMR90 Hi-C 24141950 DCP1B 30327 266 chr12 25537044 25540379 25538831 Y NA NA BCAT1,CASC1,KRAS,LYRM5,RASSF8 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 KRAS 133190 267 chr12 26998568 27000997 26999551 N NA ITPR2 RASSF8,BHLHE41,ITPR2,ASUN,STK38L,SSPN,TM7SF3 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ITPR2 12437 268 chr12 27019417 27021068 27020279 N NA ITPR2 ITPR2,TM7SF3,ASUN IMR90 Hi-C 24141950 ITPR2 33286 269 chr12 27022051 27026171 27023371,27025677 N,N NA;NA ITPR2 ITPR2,ASUN IMR90 Hi-C 24141950 ITPR2 35920 270 chr12 28341660 28345438 28343609 N NA NA KLHDC5,CCDC91 IMR90 Hi-C 24141950 CCDC91 64695 271 chr12 29301127 29302991 29302130 N NA NA NA NA NA NA ERGIC2 231152 272 chr12 31892945 31894539 31893665 N NA AMN1 C12orf35 IMR90 Hi-C 24141950 AMN1 10837 273 chr12 32047274 32052498 32049670 N NA NA AMN1 IMR90 Hi-C 24141950 C12orf35 59855 274 chr12 32177164 32179825 32178981 N NA NA NA NA NA NA C12orf35 64811 275 chr12 32183822 32186494 32184284 N NA NA NA NA NA NA C12orf35 71469 276 chr12 4251809 4252915 4252351 Y EFCAB4B,PARP11,CCND2,C12orf4 NA CCND2 IMR90 Hi-C 24141950 C12orf5 177444 277 chr12 4378025 4379813 4378609 Y PARP11,C12orf4,CCND2,C12orf5 NA PARP11 IMR90 Hi-C 24141950 C12orf5 50546 278 chr12 46063542 46065405 46064346 N NA NA ANO6 IMR90 Hi-C 24141950 LOC400027 56299 279 chr12 46775920 46778981 46777227 N NA SLC38A2 SLC38A1 K562,MCF7 ChIA-PET 22265404 SLC38A2 9275 280 chr12 49627306 49628874 49628355 Y LMBR1L,TUBA1A TUBA1A,TUBA1C DHH,TUBA1A,RHEBL1,TUBA1C,TUBA1B,PRPH,MLL2 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 TUBA1C 29991 281 chr12 50337966 50340152 50339554 Y NA NA AQP2,TMBIM6,LOC100286844,NCKAP5L,BCDIN3D,RACGAP1,FMNL3,KCNH3,MCRS1,LOC283332,FAIM2,AQP5,ACCN2,SMARCD1,COX14,CERS5,GPD1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 RACGAP1 79155 282 chr12 5329885 5330952 5330222 N NA NA ANO2,NTF3 IMR90 Hi-C 24141950 KCNA6 411543 283 chr12 53764327 53766970 53764974 N NA AAAS,SP1 SP1,AAAS,SP7,PCBP2,PRR13,AMHR2,LOC100652999,MAP3K12,TARBP2,NPFF,ATF7 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 SP1 7009 284 chr12 54547618 54553402 54553148 N NA SMUG1 SMUG1,LOC100240735,FLJ12825 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 SMUG1 29376 285 chr12 57807921 57826089 57824800 N NA INHBC,GLI1,ARHGAP9 R3HDM2,SHMT2,NDUFA4L2,STAC3,INHBE,GLI1,INHBC IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 INHBC 2454 286 chr12 59988754 59992011 59990667 N NA NA NA NA NA NA SLC16A7 91115 287 chr12 6817048 6819829 6818169 N NA ING4,ZNF384,C12orf53,COPS7A,MLF2 CHD4,LPAR5,ACRBP,ZNF384,ING4,C12orf53,PTMS,LAG3,LEPREL2,GPR162,CD4 IMR90 Hi-C 24141950 C12orf53 7039 288 chr12 68757901 68760668 68759098 Y IFNG,RAP1B MDM1 RAP1B,NUP107,LOC100507250 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 MDM1 31740 289 chr12 69724699 69725720 69724912 Y LYZ YEATS4 YEATS4 K562 ChIA-PET 22265404 YEATS4 27812 290 chr12 782390 784389 783588 N NA NINJ2 CCDC77,NINJ2,B4GALNT3,WNK1 IMR90 Hi-C 24141950 NINJ2 9635 291 chr12 8111988 8113131 8112372 Y NECAP1,FOXJ2,CLEC4A,SLC2A3 SLC2A3 SLC2A3 K562 ChIA-PET 22265404 SLC2A3 23096 292 chr12 8122946 8124447 8123348 Y CLEC6A,NECAP1,FOXJ2,CLEC4A,C3AR1,SLC2A3 SLC2A3 SLC2A3,FOXJ2 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SLC2A3 34054 293 chr12 8141695 8143202 8142825 N NA FOXJ2 FOXJ2 IMR90 Hi-C 24141950 FOXJ2 42157 294 chr12 8178017 8180101 8179585 N NA FOXJ2 PEX5,SLC2A14,SLC2A3,FOXJ2,C3AR1,NECAP1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 FOXJ2 5258 295 chr12 92080857 92082423 92081334 N NA NA NA NA NA NA LOC256021 454024 296 chr12 96827682 96828814 96828167 Y NEDD1,NEDD1,CDK17 CDK17 LTA4H,ELK3,CDK17 IMR90 Hi-C 24141950 CDK17 33316 297 chr12 96839504 96840597 96839722 Y NEDD1,NEDD1,CDK17 CDK17 CDK17 IMR90 Hi-C 24141950 CDK17 45138 298 chr12 9916134 9918801 9917473 Y KLRB1,CLEC2D,CLEC2D,CLEC2D,OLR1,KLRF1,GABARAPL1,CLEC7A,CLEC2B,CLEC12A,CD69 CD69 NA NA NA NA CD69 2637 299 chr13 100071384 100073111 100072621 Y GPR18,GPR183 NA UBAC2,MIR548AN,GPR18,DOCK9,UBAC2-AS1 IMR90 Hi-C 24141950 TM9SF2 80617 300 chr13 100077408 100078468 100078064 Y GPR183 NA MIR548AN,UBAC2,DOCK9,UBAC2-AS1 IMR90 Hi-C 24141950 TM9SF2 75260 301 chr13 103243393 103245588 103244661 N NA TPP2 TPP2 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 TPP2 3698 302 chr13 105791400 105792927 105792092 N NA NA NA NA NA NA ARGLU1 1427587 303 chr13 111474582 111490647 111475171 N NA NA ING1,CARS2,COL4A2,CARKD,ANKRD10,LINC00346 IMR90 Hi-C 24141950 ANKRD10 76769 304 chr13 114047927 114049005 114048396 N NA NA LAMP1,MCF2L,MCF2L-AS1,PCID2,CUL4A,GRTP1,DCUN1D2,ADPRHL1,TMCO3 IMR90 Hi-C 24141950 ADPRHL1 58834 305 chr13 21791879 21795189 21793022 N NA MRP63,SKA3 NA NA NA NA SKA3 41138 306 chr13 21918262 21919480 21919137 N NA NA ZDHHC20 IMR90 Hi-C 24141950 ZDHHC20 114028 307 chr13 22560131 22564768 22562124 N NA NA NA NA NA NA FGF9 314916 308 chr13 23200657 23201989 23201337 N NA NA NA NA NA NA FGF9 955442 309 chr13 24519064 24529437 24528451 Y PCOTH NA SPATA13,TNFRSF19 IMR90 Hi-C 24141950 MIPEP 55477 310 chr13 24701034 24703277 24701586 Y NA SPATA13 SPATA13 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 SPATA13 31584 311 chr13 24703897 24706635 24704510 N NA SPATA13 SPATA13 IMR90 Hi-C 24141950 SPATA13 28226 312 chr13 26760132 26760997 26760703 Y WASF3 RNF6 WASF3,RNF6 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 RNF6 35511 313 chr13 27295249 27296391 27295815 N NA NA GPR12 IMR90 Hi-C 24141950 USP12 449642 314 chr13 28363191 28364224 28363830 N NA NA NA NA NA NA POLR1D 168311 315 chr13 30962187 30964738 30963616 Y NA LINC00426 LINC00426,KATNAL1,HMGB1,USPL1 IMR90 Hi-C 24141950 LINC00426 14151 316 chr13 30968773 30970025 30969377 N NA LINC00426 LINC00426,KATNAL1,USPL1,HMGB1,UBL3 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LINC00426 20737 317 chr13 30992692 30997044 30996374 N NA LINC00426,HMGB1 USPL1,KATNAL1,LINC00426,HMGB1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 HMGB1 43037 318 chr13 42074225 42075833 42074873 N NA C13orf15 DGKH,KIAA0564,C13orf15,OR7E37P IMR90 Hi-C 24141950 C13orf15 42683 319 chr13 42928814 42929910 42929371 Y TNFSF11,KIAA0564,AKAP11 NA AKAP11 IMR90 Hi-C 24141950 AKAP11 82525 320 chr13 44714498 44717296 44716268 N NA NA TSC22D1,SERP2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TSC22D1-AS1 432736 321 chr13 44815931 44818865 44817707 N NA NA TSC22D1,SERP2,NUFIP1,LINC00284 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 TSC22D1-AS1 331167 322 chr13 44847522 44849918 44848966 N NA NA SERP2,NUFIP1,TSC22D1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TSC22D1-AS1 300114 323 chr13 45884490 45886271 45885234 N NA TPT1,TPT1-AS1 TPT1-AS1,TPT1 MCF7 ChIA-PET 22265404 TPT1 29026 324 chr13 46785091 46786661 46786041 N NA LCP1 NA NA NA NA LCP1 28632 325 chr13 46852524 46853098 46852818 N NA NA NA NA NA NA LCP1 96065 326 chr13 46868973 46871806 46869959,46871686 Y,N ZC3H13,LCP1,C13orf18;NA NA NA NA NA NA KIAA0226L 89829 327 chr13 48795378 48796271 48796027 N NA ITM2B ITM2B MCF7 ChIA-PET 22265404 ITM2B 11003 328 chr13 48867631 48872744 48871178 N NA RB1 RB1 K562 ChIA-PET 22265404 RB1 5139 329 chr13 49135106 49138172 49136602 Y FNDC3A,ITM2B,RB1,LPAR6,CYSLTR2,RCBTB2 NA RCBTB2 IMR90 Hi-C 24141950 RB1 257223 330 chr13 49145116 49146153 49145610 N NA NA RB1,LPAR6,RCBTB2,ITM2B IMR90 Hi-C 24141950 RB1 267233 331 chr13 49146881 49148266 49147318 N NA NA RB1,LPAR6,RCBTB2,ITM2B IMR90 Hi-C 24141950 RB1 268998 332 chr13 50831579 50833319 50832160 N NA NA DLEU1,DLEU2,DLEU7 IMR90 Hi-C 24141950 DLEU2 131902 333 chr13 50840288 50842274 50841452 N NA NA ST13P4,DLEU7 IMR90 Hi-C 24141950 DLEU2 140611 334 chr13 50892803 50895051 50893535 N NA NA DLEU7,DLEU2,DLEU1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 DLEU2 193126 335 chr13 51086167 51087395 51086746 N NA NA DLEU2,DLEU1 IMR90 Hi-C 24141950 DLEU2 386490 336 chr13 51224720 51226249 51225483 N NA NA DLEU2,DLEU7,DLEU1 IMR90 Hi-C 24141950 RNASEH2B 257565 337 chr13 63570996 63572291 63571766 N NA NA NA NA NA NA TDRD3 2600405 338 chr13 80973358 80975124 80973808 N NA NA NA NA NA NA SPRY2 58272 339 chr13 81913800 81914367 81913973 Y NA NA NA NA NA NA SPRY2 998714 340 chr13 86115536 86116791 86115803 N NA NA NA NA NA NA SPRY2 5200450 341 chr13 87407267 87412831 87409680 Y NA NA NA NA NA NA MIR17HG 4587243 342 chr13 89571405 89573721 89572279 N NA NA NA NA NA NA MIR17HG 2426353 343 chr13 95200605 95202320 95201509 N NA TGDS NA NA NA NA TGDS 46191 344 chr14 100437054 100444205 100438020 N NA NA EML1,EVL,DEGS2,YY1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 EVL 87546 345 chr14 100658013 100660737 100659478 Y NA DEGS2,YY1 DEGS2,YY1,EVL IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 DEGS2 32001 346 chr14 100677380 100681681 100680647 N NA YY1 DEGS2,YY1,EVL IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 YY1 23421 347 chr14 100683694 100691260 100689537 N NA YY1 DEGS2,YY1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 YY1 13842 348 chr14 102187420 102189883 102188624 Y WDR20,PPP2R5C,PPP2R5C LINC00239,PPP2R5C LINC00239 K562 ChIA-PET 22265404 LINC00239 6891 349 chr14 102780220 102781582 102780774 N NA ZNF839,CINP,TECPR2 MOK,DYNC1H1,HSP90AA1,WDR20,ZNF839 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 ZNF839 4514 350 chr14 102990516 102992072 102991179 Y NA ANKRD9 ANKRD9,RCOR1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ANKRD9 14388 351 chr14 105557952 105561722 105559945 N NA NA BTBD6,BRF1,JAG2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CDCA4 70527 352 chr14 106354994 106356754 106355832 N NA KIAA0125 NA NA NA NA KIAA0125 27084 353 chr14 106550628 106553646 106551717 N NA NA NA NA NA NA KIAA0125 166790 354 chr14 106558104 106561348 106560002 N NA NA NA NA NA NA KIAA0125 174266 355 chr14 106584837 106587682 106586391 N NA NA NA NA NA NA KIAA0125 200999 356 chr14 106654449 106661367 106657830,106661056 N,N NA;NA NA NA NA NA NA KIAA0125 270611 357 chr14 106844885 106854090 106853199,106851490 N,N NA;NA NA LINC00221 K562 ChIA-PET 22265404 KIAA0125 461047 358 chr14 106930730 106934975 106934352 N NA NA NA NA NA NA KIAA0125 546892 359 chr14 107154070 107155329 107155049 N NA NA KIAA0125 IMR90 Hi-C 24141950 KIAA0125 770232 360 chr14 107173849 107178023 107175093 N NA NA LINC00221 IMR90 Hi-C 24141950 KIAA0125 790011 361 chr14 107249667 107254369 107253043 Y NA NA NA NA NA NA KIAA0125 865829 362 chr14 22391624 22392667 22392122 N NA NA NA NA NA NA METTL3 412167 363 chr14 22458389 22459379 22458602 N NA NA NA NA NA NA METTL3 478932 364 chr14 22465959 22473848 22467850,22471355 Y,N OR10G3,OR10G2,OR4E2;NA NA NA NA NA NA METTL3 486502 365 chr14 22970913 22973520 22972781 N NA NA SLC7A7,OXA1L IMR90 Hi-C 24141950 DAD1 84623 366 chr14 24952599 24954045 24953229 N NA SDR39U1 NA NA NA NA SDR39U1 40592 367 chr14 25130931 25133010 25132117 Y LTB4R,CTSG NA NA NA NA NA CTSG 85465 368 chr14 32669991 32673886 32672580,32670450 Y,N ARHGAP5;NA NA NUBPL,ARHGAP5-AS1,ARHGAP5 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ARHGAP5 123496 369 chr14 36401587 36402666 36402192 N NA NA NA NA NA NA BRMS1L 105990 370 chr14 50328143 50329402 50328809 N NA NEMF,ARF6 SOS2,C14orf182,METTL21D,NEMF,ARF6,C14orf183,DNAAF2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 NEMF 8604 371 chr14 50334121 50335693 50334953 Y RPL36AL,MGAT2,NEMF,C14orf182,SOS2,METTL21D,ARF6 NEMF,ARF6 METTL21D,SOS2,ARF6,C14orf182,NEMF,C14orf183 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 NEMF 14582 372 chr14 50505480 50507893 50507343 N NA C14orf182 C14orf182,ARF6 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 C14orf182 31242 373 chr14 50527413 50529780 50529016 N NA C14orf183 NA NA NA NA C14orf183 29581 374 chr14 52313190 52314949 52314111 N NA GNG2 GNG2,FRMD6,C14orf166 IMR90 Hi-C 24141950 GNG2 12073 375 chr14 52725541 52727030 52726379 Y NA NA PTGDR,TXNDC16 IMR90 Hi-C 24141950 C14orf166 269313 376 chr14 53683998 53686293 53684527 N NA NA NA NA NA NA DDHD1 63952 377 chr14 53692753 53695278 53693476 N NA NA NA NA NA NA DDHD1 72707 378 chr14 55568414 55570530 55569987 Y LGALS3,FBXO34,FBXO34,GCH1,MAPK1IP1L NA LGALS3,DLGAP5,MAPK1IP1L IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 MAPK1IP1L 50052 379 chr14 56824980 56825702 56825136 N NA NA PELI2,LINC00520 IMR90 Hi-C 24141950 C14orf101 220809 380 chr14 56878224 56883269 56879650 N NA NA RPL13AP3,LINC00520,PELI2 IMR90 Hi-C 24141950 C14orf101 163242 381 chr14 60797075 60799504 60798289 N NA NA C14orf39,SIX6,TMEM30B IMR90 Hi-C 24141950 PPM1A 84605 382 chr14 60809999 60811681 60810436 N NA NA NA NA NA NA PPM1A 97529 383 chr14 61123457 61124569 61123683 N NA SIX1 SLC38A6 IMR90 Hi-C 24141950 SIX1 7302 384 chr14 65346099 65347673 65347020 N NA CHURC1-FNTB SPTB IMR90 Hi-C 24141950 CHURC1-FNTB 33406 385 chr14 65753901 65755420 65754373 N NA NA FUT8,LOC645431,MIR4708 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC645431 123915 386 chr14 66313153 66315038 66314223 N NA NA NA NA NA NA LOC645431 433818 387 chr14 69270834 69284454 69282496 N NA ZFP36L1 RAD51B,ZFP36L1,ZFYVE26 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZFP36L1 7874 388 chr14 71288244 71290228 71289118 N NA MAP3K9 PCNX IMR90 Hi-C 24141950 MAP3K9 12356 389 chr14 71786007 71788775 71787445 N NA NA SIPA1L1,PCNX IMR90 Hi-C 24141950 LOC145474 165803 390 chr14 75713812 75715421 75714365 Y NEK9,FOS FOS,LOC731223 TMED10,LOC731223,NEK9,ZC2HC1C,FOS,BATF,JDP2 IMR90 Hi-C 24141950 FOS 30060 391 chr14 75724613 75726901 75725880 N NA FOS,LOC731223 TMED10,RPS6KL1,EIF2B2,NEK9,LOC731223,FOS,JDP2,BATF,PGF IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 FOS 18580 392 chr14 77384762 77387102 77386470,77384771 Y,Y IRF2BPL;IRF2BPL NA IRF2BPL,POMT2,GSTZ1,KIAA1737,ZDHHC22 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ANGEL1 105479 393 chr14 77388764 77390205 77389072 Y ZDHHC22,NGB,VASH1,KIAA1737,IRF2BPL NA IRF2BPL,POMT2,GSTZ1,KIAA1737,ZDHHC22 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 IRF2BPL 104829 394 chr14 77421678 77424195 77422806 N NA NA IRF2BPL,KIAA1737 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 IRF2BPL 70839 395 chr14 77427536 77428915 77428395 Y NA NA IRF2BPL MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 IRF2BPL 66119 396 chr14 77498031 77501527 77499875 Y VASH1,C14orf166B,IRF2BPL IRF2BPL KIAA1737,POMT2,GSTZ1 MCF7 ChIA-PET 22265404 IRF2BPL 2997 397 chr14 77503642 77508624 77504421,77506727 Y,N NA;NA IRF2BPL IRF2BPL IMR90 Hi-C 24141950 IRF2BPL 8608 398 chr14 81901559 81903457 81902861 N NA STON2 NA NA NA NA STON2 7811 399 chr14 90186682 90187699 90187398 Y FOXN3,FOXN3,TDP1 NA EFCAB11,LOC400236,FOXN3,PRO1768 IMR90 Hi-C 24141950 FOXN3 101188 400 chr14 90239502 90240797 90240275 N NA NA FOXN3,PRO1768,EFCAB11,TTC8,LOC400236 IMR90 Hi-C 24141950 FOXN3 154008 401 chr14 90845033 90851567 90849795 N NA C14orf102,CALM1 C14orf102,CALM1,TTC7B,EFCAB11,TDP1,PSMC1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 CALM1 11760 402 chr14 95381703 95386178 95383561,95385117 N,N NA;NA NA NA NA NA NA GSC 145204 403 chr14 95411873 95413037 95412509 N NA NA NA NA NA NA GSC 175374 404 chr14 98172750 98174699 98173759 N NA NA NA NA NA NA C14orf64 269762 405 chr14 98189721 98191237 98190479 N NA NA NA NA NA NA C14orf64 253224 406 chr14 98242333 98245113 98243604 N NA NA NA NA NA NA C14orf64 199348 407 chr14 98460026 98461276 98460594 N NA C14orf64 NA NA NA NA C14orf64 15565 408 chr14 98603404 98608553 98606503 N NA NA NA NA NA NA C14orf64 158943 409 chr14 98627237 98644809 98629701,98634289,98639890,98642046 N,N,N,N NA;NA;NA;NA NA NA NA NA NA C14orf64 182776 410 chr14 98648824 98657874 98651494,98653887,98653951,98656040 N,N,N,Y NA;NA;NA;NA NA NA NA NA NA C14orf64 204363 411 chr14 98662506 98668026 98664942 Y NA NA NA NA NA NA C14orf64 218045 412 chr14 98673028 98678929 98676789 Y NA NA CMTM7 MCF7 ChIA-PET 19890323 C14orf64 228567 413 chr14 98688835 98690752 98690243 N NA NA NA NA NA NA C14orf64 244374 414 chr15 101389519 101390506 101389941 N NA NA ASB7,LRRK1,ALDH1A3,LINS IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ASB7 246764 415 chr15 101666929 101668298 101667359 Y NA NA CHSY1,SELS,LRRK1 IMR90 Hi-C 24141950 CHSY1 123839 416 chr15 25008484 25011168 25009846 N NA NA NA NA NA NA PAR-SN 215973 417 chr15 27818068 27819578 27818898 N NA NA NA NA NA NA GABRB3 799133 418 chr15 29130242 29133293 29131400 N NA NA NA NA NA NA APBA2 80547 419 chr15 31726835 31729400 31727294 N NA NA KLF13 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 KLF13 107752 420 chr15 38929364 38932385 38931221 N NA NA RASGRP1,C15orf53 IMR90 Hi-C 24141950 C15orf53 56414 421 chr15 38942584 38944897 38943663 Y NA C15orf53 RASGRP1,FAM98B MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 C15orf53 43902 422 chr15 39719109 39720417 39719580 N NA NA C15orf53,FSIP1,THBS1 IMR90 Hi-C 24141950 C15orf54 176224 423 chr15 39787775 39791180 39789968,39788285 N,N NA;NA NA C15orf53,THBS1,C15orf54,FSIP1 IMR90 Hi-C 24141950 C15orf54 244890 424 chr15 40407561 40409267 40408157 N NA BUB1B SRP14,LOC100131089,BMF,BUB1B,PAK6,PLCB2,ANKRD63 IMR90 Hi-C 24141950 BUB1B 43943 425 chr15 41912725 41919216 41913758 N NA MGA TYRO3,MAPKBP1,MGA IMR90 Hi-C 24141950 MGA 33394 426 chr15 42782466 42784623 42783395 N NA ZFP106,SNAP23 NA NA NA NA SNAP23 2881 427 chr15 52273785 52274969 52274558 N NA LEO1,MAPK6 MAPK6,GNB5,MYO5C,BCL2L10 MCF7,K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 LEO1 9827 428 chr15 56828056 56832623 56830365 Y RFX7,ZNF280D,TCF12 NA ZNF280D IMR90 Hi-C 24141950 TEX9 170412 429 chr15 57129976 57131783 57130696 N NA NA TCF12 IMR90 Hi-C 24141950 TCF12 79050 430 chr15 58570405 58572621 58571421 N NA NA LIPC,ADAM10,SLTM IMR90 Hi-C 24141950 LIPC 151554 431 chr15 58583539 58586686 58585361 N NA NA SLTM,LIPC,ADAM10,FAM63B IMR90 Hi-C 24141950 LIPC 137489 432 chr15 58601661 58603390 58602582 N NA NA LIPC,FAM63B,ADAM10 IMR90 Hi-C 24141950 LIPC 120785 433 chr15 58624259 58625186 58624755 N NA NA LIPC,ADAM10,FAM63B IMR90 Hi-C 24141950 LIPC 98989 434 chr15 58701982 58703512 58702611 N NA LIPC ADAM10,LIPC IMR90 Hi-C 24141950 LIPC 20663 435 chr15 60103341 60108214 60104440,60106806 N,N NA;NA NA NA NA NA NA BNIP2 121699 436 chr15 62679613 62684876 62682697 N NA NA TLN2,MGC15885 IMR90 Hi-C 24141950 VPS13C 326949 437 chr15 63728928 63729605 63729250 N NA NA FBXL22,LOC100130855,USP3,CA12,APH1B,RAB8B,LACTB IMR90 Hi-C 24141950 USP3 67105 438 chr15 65127401 65129147 65128015 Y NA PIF1,PLEKHO2 PIF1,RBPMS2,PLEKHO2,ANKDD1A,SPG21,MTFMT K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 PLEKHO2 4935 439 chr15 65185565 65189074 65186718,65188151 Y,Y ZNF609,OAZ2,PLEKHO2,SPG21,SPG21,PARP16;ZNF609,OAZ2,PLEKHO2,SPG21,SPG21 NA SPG21 IMR90 Hi-C 24141950 PLEKHO2 51483 440 chr15 65587824 65589668 65588531 N NA PARP16 MTFMT,IGDCC4,PDCD7,RASL12,IGDCC3,OSTBETA,CILP,PARP16,CLPX,UBAP1L,DPP8,PTPLAD1,SPG21,KBTBD13 MCF7,K562 ChIA-PET 22265404 PARP16 8806 441 chr15 65596105 65598486 65596932 Y DENND4A PARP16 PARP16,CILP,CLPX,IGDCC3,PDCD7,MTFMT,DPP8,RASL12,OSTBETA,IGDCC4,SPG21,PTPLAD1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 PARP16 17087 442 chr15 67331046 67333086 67331803 N NA SMAD3 SMAD3,IQCH,AAGAB IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 SMAD3 25109 443 chr15 68176434 68177825 68177239 N NA NA PIAS1,CLN6,C15orf61,LOC100506686,CALML4 IMR90 Hi-C 24141950 PIAS1 168747 444 chr15 68237783 68240158 68238812 N NA NA PIAS1,CALML4,CLN6,C15orf61,LOC100506686 IMR90 Hi-C 24141950 PIAS1 106414 445 chr15 68247023 68248943 68247786 N NA NA PIAS1,LOC100506686,C15orf61 IMR90 Hi-C 24141950 PIAS1 97629 446 chr15 68796435 68797777 68797167 N NA NA FEM1B,ITGA11,CLN6,CORO2B,MIR548H4 IMR90 Hi-C 24141950 FEM1B 226294 447 chr15 70550548 70552385 70551454 Y TLE3 NA LOC145837,C15orf50 IMR90 Hi-C 24141950 TLE3 160292 448 chr15 75400375 75403501 75401496 N NA NA C15orf39,SCAMP5,PPCDC MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 PPCDC 84448 449 chr15 77196346 77198636 77197752 N NA SCAPER,RCN2 ETFA IMR90 Hi-C 24141950 SCAPER 20129 450 chr15 79152248 79153590 79152768 Y IREB2 MORF4L1 MORF4L1,ADAMTS7 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 MORF4L1 11582 451 chr15 81707500 81710094 81708630 N NA NA IL16,EFTUD1,MEX3B IMR90 Hi-C 24141950 STARD5 90976 452 chr15 86624966 86627096 86626241 N NA NA NTRK3 IMR90 Hi-C 24141950 KLHL25 286777 453 chr15 87735661 87749074 87737738,87745460 N,N NA;NA NA NA NA NA NA MRPL46 1261559 454 chr15 88944381 88945452 88944867 N NA NA NA NA NA NA MRPL46 65181 455 chr15 90684190 90687152 90686287 N NA IDH2,SEMA4B IQGAP1,IDH2,C15orf38-AP3S2,SEMA4B,CIB1,C15orf58,ZNF710,TTLL13 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 IDH2 38482 456 chr15 91228345 91230854 91229938 N NA BLM BLM,CRTC3,IQGAP1,ZNF774 IMR90 Hi-C 24141950 BLM 29725 457 chr15 93362184 93364773 93363676 Y ST8SIA2,RGMA,RGMA,RGMA,RGMA,CHD2 NA ASB9P1,CHD2,LOC100507217 IMR90 Hi-C 24141950 LOC100507217 61300 458 chr15 93374264 93375905 93375196 Y NA NA CHD2,LOC100507217,ASB9P1 K562,MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 LOC100507217 50168 459 chr15 93774459 93777104 93775045 N NA NA NA NA NA NA CHD2 330908 460 chr15 93831829 93835323 93833307,93834845 N,N NA;NA NA NA NA NA NA CHD2 388278 461 chr15 94773618 94775346 94774636 N NA NA NA NA NA NA CHD2 1330067 462 chr15 94830673 94832309 94831156 Y MCTP2 NA MCTP2,NMUR2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,19890323 CHD2 1387122 463 chr15 96470567 96473633 96472688 N NA NA NR2F2,LOC400456 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 NR2F2 395524 464 chr15 98682122 98682859 98682544 N NA NA NA NA NA NA ARRDC4 178189 465 chr15 99557322 99565740 99558560 N NA NA PGPEP1L,IGF1R MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 LRRC28 225912 466 chr16 11326864 11327662 11327124 Y SNN,LITAF,LITAF,NUBP1,CIITA,SOCS1 SOCS1 CLEC16A IMR90 Hi-C 24141950 SOCS1 22377 467 chr16 11391304 11391944 11391498 N NA SOCS1,RMI2 SOCS1,DEXI,CLEC16A,PRM2,PRM3,TNP2,RMI2 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 SOCS1 41265 468 chr16 12706286 12709889 12707237 N NA NA SNX29,CPPED1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CPPED1 187855 469 chr16 17107332 17108157 17107792 N NA NA NA NA NA NA XYLT1 456581 470 chr16 17567579 17569016 17567983 N NA XYLT1 XYLT1 IMR90 Hi-C 24141950 XYLT1 2841 471 chr16 22206743 22207680 22207193 Y NA EEF2K POLR3E,EEF2K,UQCRC2,PDZD9,C16orf52 K562,MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 EEF2K 9912 472 chr16 29035020 29036386 29035233 N NA SPNS1,LAT SPNS1,NFATC2IP IMR90 Hi-C 24141950 LAT 38873 473 chr16 29039264 29041411 29040573 N NA LAT SPNS1,NFATC2IP IMR90 Hi-C 24141950 LAT 43117 474 chr16 2917616 2918849 2918370 N NA FLYWCH2,FLYWCH1 PRSS22,LOC100128788,PRSS27,SRRM2,PRSS33,PRSS41,TCEB2,PAQR4,PKMYT1,FLYWCH1,FLYWCH2,KREMEN2,ZG16B,PRSS30P,PRSS21 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 FLYWCH2 14347 475 chr16 30142555 30144375 30143485 N NA YPEL3,GDPD3,MAPK3 MAPK3 MCF7 ChIA-PET 22265404 MAPK3 7925 476 chr16 30469808 30471280 30470213 N NA DCTPP1,SEPHS2,ITGAL ZNF771,DCTPP1,SEPHS2,ZNF688,PRR14,ZNF764,ITGAL,ZNF689,ZNF747,ZNF785,ZNF768,SRCAP IMR90 Hi-C 24141950 SEPHS2 12584 477 chr16 30631288 30637184 30634742 N NA ZNF688,ZNF689,PRR14,FBRS PPP4C,ZNF48,ZNF771,ITGAL,PRR14 IMR90 Hi-C 24141950 ZNF689 9606 478 chr16 30644368 30647150 30645723 Y CORO1A,ZNF48,ZNF48,ZNF48,ZNF48,ITGAL,ZNF646,SRCAP,RNF40,PHKG2,MYST1,C16orf93,ZNF747,ZNF764,ZNF688,ZNF689,PRR14 ZNF689,PRR14,FBRS PPP4C,PRR14,ITGAL,ZNF785,TBC1D10B,FBRS,TBX6,GDPD3,YPEL3,MAPK3,ZNF48,SEPT1,MYLPF,DCTPP1,SEPHS2,ZNF771,ZNF764,ZNF688,ZNF689,SRCAP,ZNF768 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 PRR14 15091 479 chr16 30825140 30826693 30825738 Y NA ZNF629 ZNF629,RNF40,MIR4519 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF629 26617 480 chr16 3398076 3399742 3398839 N NA ZNF75A NA NA NA NA ZNF75A 42643 481 chr16 34793928 34796669 34795131 N NA NA NA NA NA NA ZNF267 2908849 482 chr16 4348508 4358329 4357771,4356547 Y,N CORO7;NA LOC100507501,TFAP4,PAM16 ADCY9,TFAP4,CREBBP,VASN,CORO7-PAM16,LOC100507501 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 TFAP4 25507 483 chr16 47071464 47072157 47071880 N NA NA ABCC11,DNAJA2,NETO2,ITFG1,PHKB,ABCC12 IMR90 Hi-C 24141950 DNAJA2 63839 484 chr16 50300153 50301023 50300424 N NA ADCY7 PAPD5,BRD7,ADCY7 IMR90 Hi-C 24141950 ADCY7 20800 485 chr16 50308129 50310499 50308421 N NA ADCY7 NA NA NA NA ADCY7 11324 486 chr16 54177565 54179198 54178100 N NA NA FTO IMR90 Hi-C 24141950 IRX3 141180 487 chr16 54276967 54278808 54278175 N NA IRX3 NA NA NA NA IRX3 41570 488 chr16 54544518 54546696 54545785 N NA NA NA NA NA NA IRX3 224140 489 chr16 57333359 57334874 57334168 N NA NA NLRC5,CPNE2,PLLP,CIAPIN1,FAM192A,RSPRY1,ARL2BP,CCL17,COQ9,CX3CL1,CCL22,POLR2C,GPR114,CCDC102A IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ARL2BP 54321 490 chr16 57843829 57845077 57844333 N NA NA NA NA NA NA KATNB1 74169 491 chr16 67554260 67555748 67555373 N NA ATP6V0D1,FAM65A,CTCF AGRP,TSNAXIP1,GFOD2,RANBP10,PSKH1,CTCF,C16orf48,C16orf86 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 FAM65A 6969 492 chr16 72697593 72699743 72698952 N NA NA ZFHX3 IMR90 Hi-C 24141950 TXNL4B 569378 493 chr16 81778930 81780805 81779993 N NA PLCG2 GAN,ATMIN,PKD1L2,BCMO1,MIR4720,CMIP IMR90 Hi-C 24141950 PLCG2 32094 494 chr16 84547694 84550479 84548719 Y COTL1 KIAA1609 COTL1 MCF7 ChIA-PET 22265404 KIAA1609 9406 495 chr16 85343570 85344328 85344045 Y NA NA KIAA0513,FAM92B,LOC400548,LINC00311,LOC727710,KIAA0182,GINS2 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 KIAA0513 282160 496 chr16 85480668 85483842 85481143,85482337 N,N NA;NA NA KIAA0182 IMR90 Hi-C 24141950 KIAA0182 161187 497 chr16 85495266 85496978 85496238 N NA NA KIAA0182,LOC727710,C16orf74,LINC00311,ZDHHC7,LOC400548 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 KIAA0182 148051 498 chr16 85582572 85603085 85588422,85600613,85591988 N,Y,N NA;NA;NA KIAA0182 GINS2,KIAA0182,LINC00311,LOC400548,FAM92B,KIAA0513,LOC727710,C16orf74,COX4NB IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 KIAA0182 41944 499 chr16 87810411 87813853 87812184 N NA KLHDC4 ZCCHC14,JPH3,KLHDC4,CA5A,SLC7A5,BANP,ZFPM1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 KLHDC4 10813 500 chr16 87838964 87841225 87840526 N NA KLHDC4 SLC7A5 MCF7 ChIA-PET 22265404 KLHDC4 39366 501 chr16 89047656 89053085 89049695 N NA CBFA2T3 CBFA2T3,ACSF3 IMR90 Hi-C 24141950 CBFA2T3 4152 502 chr16 89057539 89061725 89059210 N NA CBFA2T3 CBFA2T3,ACSF3 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CBFA2T3 14035 503 chr16 89097389 89100291 89098563 N NA NA ACSF3,CBFA2T3,LOC400558,LINC00304,CDH15 IMR90 Hi-C 24141950 CBFA2T3 53885 504 chr17 14331504 14332625 14331816 N NA NA NA NA NA NA COX10 358785 505 chr17 14373240 14374771 14373993 N NA NA HS3ST3B1 IMR90 Hi-C 24141950 COX10 400521 506 chr17 17306990 17308020 17307351 N NA NA NA NA NA NA MED9 72280 507 chr17 21002098 21003474 21002620 Y KCNJ18 DHRS7B USP22,C17orf103 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 DHRS7B 26767 508 chr17 21178615 21179834 21179153 Y CCDC144NL,KCNJ12,C17orf103,MAP2K3,MAP2K3 C17orf103,MAP2K3 MAP2K3,KCNJ12,C17orf51,USP22,DHRS7B,C17orf103 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 MAP2K3 8134 509 chr17 21960605 21961343 21960945 N NA NA NA NA NA NA C17orf51 505664 510 chr17 25675712 25681722 25680923 Y NA NA KSR1,WSB1,MIR4522 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 WSB1 54606 511 chr17 25782798 25783873 25783360 N NA KSR1 KSR1 MCF7 ChIA-PET 22265404 KSR1 15163 512 chr17 30453866 30455006 30454722 N NA RHOT1 RHOT1,LRRC37B IMR90 Hi-C 24141950 RHOT1 14467 513 chr17 32543875 32546681 32545009 N NA NA CCL2,CCL8,CCL13 IMR90 Hi-C 24141950 CCL1 143571 514 chr17 33540458 33543114 33541481 N NA SLFN5 UNC45B,SLC35G3,SLFN14,NLE1 IMR90 Hi-C 24141950 SLFN5 26972 515 chr17 35077445 35080334 35078700 Y NA NA LHX1,AATF,ACACA,MRM1,DHRS11 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 MRM1 119420 516 chr17 35083843 35087334 35084335 N NA NA LHX1,AATF,ACACA IMR90 Hi-C 24141950 MRM1 125818 517 chr17 37773830 37775124 37774322 N NA STARD3,TCAP NA NA NA NA STARD3 18209 518 chr17 38671390 38685045 38671641,38673114 N,N NA;NA CCR7 TNS4,IGFBP4,KRT42P,CDC6,RARA,TOP2A,CCR7,GJD3,RAPGEFL1,WIPF2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CCR7 36691 519 chr17 38738335 38739056 38738731 N NA CCR7 KRT14,CCR7,KRT42P,KRT222,KRT26,KRT27,RARA,WIPF2,CDC6,GJD3,TOP2A,IGFBP4,TNS4,KRT24,KRT25,KRT28,KRT9,EIF1,SMARCE1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CCR7 16599 520 chr17 39821837 39823097 39822352 Y NA EIF1 KRT19,KRT15,CCR7,SMARCE1,KRT222,KRT26,KRT25,KRT28,KRT10,TMEM99,KRT27,KRT20,KRT23,KRTAP2-2,KRTAP2-1,KRTAP2-4,LOC730755,KRTAP17-1,KRT14,LOC147093,KRT9,EIF1 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 EIF1 22030 521 chr17 40222736 40232683 40225084 N NA DHX58,KAT2A RAB5C,TTC25,CNP,DNAJC7,NKIRAS2,ZNF385C,KCNH4,KAT2A,DHX58 IMR90 Hi-C 24141950 DHX58 32068 522 chr17 41396038 41402070 41400480 N NA TMEM106A BRCA1,NBR2,IFI35,RND2,VAT1,NBR1,TMEM106A,LOC100130581,DHX8 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 TMEM106A 32144 523 chr17 41406204 41408453 41407047 N NA TMEM106A IFI35,RND2,BRCA1,VAT1,NBR2,NBR1,TMEM106A,LOC100130581 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 TMEM106A 42310 524 chr17 41797295 41798507 41798292 N NA NA LOC100130581,MPP3,DUSP3,DHX8,ETV4,MEOX1,C17orf105,SOST,CD300LG,HDAC5 IMR90 Hi-C 24141950 DUSP3 57861 525 chr17 44342614 44345362 44344337 Y NA KANSL1 KANSL1-AS1,KANSL1 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 KANSL1 39874 526 chr17 53519366 53522824 53521467 N NA MMD NA NA NA NA MMD 20025 527 chr17 58212361 58213385 58213121 N NA NA C17orf64,HEATR6,LOC645638,USP32,APPBP2,LOC653653 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 HEATR6 56069 528 chr17 63118337 63119850 63119541 Y GNA13 RGS9 RGS9,GNA13,AMZ2P1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 RGS9 13606 529 chr17 66015468 66017441 66016167 Y NA C17orf58,KPNA2 BPTF,C17orf58,KPNA2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 KPNA2 14407 530 chr17 66163370 66165605 66164987 N NA LOC440461 WIPI1,LOC100499466,KPNA2,SLC16A6,ARSG IMR90 Hi-C 24141950 LOC440461 29196 531 chr17 66178546 66187346 66179350 N NA LOC440461 WIPI1 IMR90 Hi-C 24141950 LOC440461 7455 532 chr17 67322567 67324864 67323334 N NA NA KCNJ16,UNK IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PRKAR1A 814457 533 chr17 72977442 72979021 72978486 Y KIAA0195,RAB37,GRIN2C,KCTD2,FADS6,C17orf28,CDR2L CDR2L,ICT1 CDR2L,ICT1,C17orf28,HN1 MCF7,K562 ChIA-PET 22265404 CDR2L 4706 534 chr17 74992633 74995613 74993913 N NA NA MFSD11,MGAT5B,SEC14L1 IMR90 Hi-C 24141950 SEC14L1 89112 535 chr17 75613824 75614888 75614465 N NA NA TNRC6C,LOC100507351 IMR90 Hi-C 24141950 FLJ45079 265281 536 chr17 75641395 75642790 75641678 N NA NA TNRC6C,LOC100507351,FLJ45079 IMR90 Hi-C 24141950 FLJ45079 237379 537 chr17 75662548 75663806 75663103 N NA NA TNRC6C,FLJ45079,LOC100507351 IMR90 Hi-C 24141950 FLJ45079 216363 538 chr17 75779704 75781415 75780499 N NA NA TNRC6C,LOC100507351 IMR90 Hi-C 24141950 FLJ45079 98754 539 chr17 75842201 75843563 75842819 N NA FLJ45079 NA NA NA NA FLJ45079 36606 540 chr17 75953337 75967204 75954585,75958617,75956272 Y,N,Y NA;NA;TMC8,TMC6,TMC6,TNRC6C TNRC6C TNRC6C,LOC100507351,FLJ45079,TK1,SEPT9,LOC100131096 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 TNRC6C 33114 541 chr17 7893157 7893992 7893662 N NA NA CHD3,EFNB3,DNAH2,KDM6B,CNTROB,KCNAB3,TRAPPC1,GUCY2D,ALOX15B,LOC284023 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CNTROB 57715 542 chr17 79310163 79319801 79319331 Y FAM195B,CHMP6,C17orf89,SLC38A10,MRPL12,HGS,C17orf90,C17orf70,ACTG1 SLC38A10 ACTG1,SLC38A10,LINC00482,TMEM105,MIR4740,BAHCC1,C17orf70,FSCN2,C17orf56,C17orf89,MIR3186,NPLOC4 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 SLC38A10 41067 543 chr18 20650272 20652372 20651491,20651503 Y,Y C18orf8;C18orf8 NA RIOK3,CABLES1,TMEM241 IMR90 Hi-C 24141950 RBBP8 136977 544 chr18 24235599 24238515 24236855 N NA LOC728606 TAF4B,KCTD1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC728606 45087 545 chr18 24288401 24295296 24289771 N NA LOC728606 TAF4B IMR90 Hi-C 24141950 LOC728606 4799 546 chr18 33160408 33162179 33161213 N NA NA NA NA NA NA GALNT1 72354 547 chr18 37379205 37380489 37380016 N NA LOC647946 NA NA NA NA LOC647946 47246 548 chr18 45462290 45465307 45464222 N NA SMAD2 SMAD2 MCF7,K562 ChIA-PET 22265404 SMAD2 4775 549 chr18 46502016 46502666 46502287 Y SMAD7 NA SMAD7,CTIF MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 CTIF 436589 550 chr18 47833280 47834917 47834237 Y CCDC11,MBD1,MBD1 CCDC11,MBD1,CXXC1 CCDC11,CXXC1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CXXC1 18588 551 chr18 54740153 54742351 54741128 N NA NA NA NA NA NA ONECUT2 360566 552 chr18 57812117 57816675 57813591 N NA NA NA NA NA NA PMAIP1 244925 553 chr18 60764210 60769532 60766458,60769185 N,N NA;NA NA NA NA NA NA BCL2 217081 554 chr18 67632933 67636493 67635429 N NA CD226 NA NA NA NA CD226 8701 555 chr18 68287298 68289547 68289196 Y RTTN NA NA NA NA NA SOCS6 331161 556 chr18 8704243 8709993 8705175 N NA CCDC165 CCDC165,NDUFV2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CCDC165 7376 557 chr19 11750042 11751353 11750532 N NA ZNF627 NA NA NA NA ZNF627 41807 558 chr19 13841702 13843584 13842567 N NA CCDC130,MRI1,C19orf53 CACNA1A IMR90 Hi-C 24141950 CCDC130 15169 559 chr19 14385482 14386149 14385787 N NA NA LOC100507373,C19orf57,LPHN1,PALM3,RLN3,LOC113230,IL27RA,CD97,DDX39A IMR90 Hi-C 24141950 LPHN1 68485 560 chr19 15436185 15443678 15443044 N NA BRD4,AKAP8 AKAP8L,BRD4,AKAP8,ILVBL,NOTCH3,EPHX3 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 BRD4 44923 561 chr19 21758383 21774588 21768774 N NA NA NA NA NA NA ZNF429 69946 562 chr19 21783656 21788764 21786683 N NA NA NA NA NA NA ZNF429 95219 563 chr19 21791024 21797090 21795255 N NA NA NA NA NA NA ZNF429 102587 564 chr19 21808465 21813937 21810406 Y NA NA NA NA NA NA ZNF429 120028 565 chr19 23456053 23457352 23457086 N NA ZNF724P NA NA NA NA ZNF724P 22881 566 chr19 24215810 24217479 24216618 N NA NA NA NA NA NA ZNF254 52497 567 chr19 29108686 29111515 29111078 N NA NA NA NA NA NA UQCRFS1 592621 568 chr19 29121852 29124967 29123420,29124961 N,N NA;NA NA LOC284395 IMR90 Hi-C 24141950 UQCRFS1 579169 569 chr19 3338396 3339338 3338693 Y NA NFIC ZNF77,CELF5,NFIC,DOHH,FZR1,C19orf77,C19orf29-AS1,GIPC3,TBXA2R,C19orf29,PIP5K1C,APBA3,MRPL54 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 NFIC 20223 570 chr19 34624641 34626668 34625423 N NA LSM14A CEBPA,LOC80054,KCTD15,CHST8,UBA2,KIAA0355,LRP3,SLC7A10,WDR88,LSM14A,PEPD IMR90 Hi-C 24141950 LSM14A 36684 571 chr19 36192171 36194020 36193439 Y USF2,CD22,FFAR1,HAUS5,ETV2,WDR62,HCST,ZBTB32,U2AF1L4,MLL4,IGFLR1,ARHGAP33 UPK1A,MLL4,IGFLR1,U2AF1L4,LIN37 MLL4,ZBTB32 K562 ChIA-PET 22265404 MLL4 14901 572 chr19 36421714 36423273 36422585 N NA NFKBID,LRFN3 NFKBID,HCST MCF7 ChIA-PET 22265404 LRFN3 4749 573 chr19 37708255 37710104 37709080 N NA ZNF383 ZNF585B,ZNF383 IMR90 Hi-C 24141950 ZNF383 7262 574 chr19 37808072 37809685 37808757 N NA HKR1 NA NA NA NA HKR1 15895 575 chr19 40446794 40450612 40448090,40450126 N,N NA;NA PSMC4 LEUTX,FCGBP IMR90 Hi-C 24141950 PSMC4 26461 576 chr19 45941620 45944304 45942941 N NA CD3EAP,PPP1R13L,ERCC1,FOSB ERCC1,PPM1N,RTN2,VASP,FOSB,CD3EAP,PPP1R13L K562,MCF7 ChIA-PET 22265404 ERCC1 14443 577 chr19 45953309 45955332 45954425 Y NA CD3EAP,PPP1R13L,ERCC1,FOSB,RTN2,PPM1N FOSB,VASP IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 FOSB 15921 578 chr19 47294835 47296083 47295375 Y NA FKRP,STRN4,SLC1A5 FKRP,STRN4 IMR90 Hi-C 24141950 SLC1A5 2993 579 chr19 47359045 47365410 47363942 Y PNMAL1,PNMAL2,LOC100506012,CALM3,DACT3,ARHGAP35 AP2S1 AP2S1,SLC1A5,MIR3190,BBC3,ARHGAP35,ZC3H4,CCDC9,FKRP,STRN4,NPAS1 MCF7,K562 ChIA-PET 22265404 AP2S1 4842 580 chr19 48102955 48105066 48103803 Y GLTSCR2,BBC3,PRR24,NAPA,GLTSCR1 GLTSCR1 SLC8A2,MEIS3,NAPA,LOC100505681,KPTN,GLTSCR1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 GLTSCR1 6387 581 chr19 482130 491387 488805 N NA TPGS1,CDC34 ODF3L2,SHC2,TPGS1,MADCAM1 MCF7,K562 ChIA-PET 22265404 TPGS1 16110 582 chr19 50871758 50873263 50872328 N NA KCNC3,NR1H2,POLD1,SPIB NA NA NA NA NR1H2 6417 583 chr19 53399931 53401737 53400997 N NA ZNF468,ZNF320,ZNF321P ZNF468,ZNF160 IMR90 Hi-C 24141950 ZNF320 5332 584 chr19 54888804 54891708 54889980 Y NA LAIR1 PRKCG,CACNG7,CACNG6,VSTM1,TSEN34,MBOAT7,RPS9 K562,HELA 5C 22955621 LAIR1 12083 585 chr19 54899593 54900911 54900216 N NA LAIR1 NA NA NA NA LAIR1 22872 586 chr19 56824779 56827583 56826397 N NA NA NA NA NA NA ZNF583 87800 587 chr19 5799027 5799913 5799502 N NA PRR22,DUS3L,NRTN NDUFA11 K562 ChIA-PET 22265404 DUS3L 7778 588 chr19 6515886 6518135 6516672 N NA DENND1C,TUBB4A,TNFSF9 TNFSF9 K562 ChIA-PET 22265404 TNFSF9 12875 589 chr19 7413206 7415909 7414408 N NA ARHGEF18 ZNF557,INSR IMR90 Hi-C 24141950 ARHGEF18 44090 590 chr19 9419038 9421101 9420444 N NA ZNF699,ZNF559-ZNF177 NA NA NA NA ZNF699 3243 591 chr2 101428516 101429616 101428856 N NA NPAS2 NPAS2,RPL31 IMR90 Hi-C 24141950 NPAS2 6997 592 chr2 101839714 101841169 101840489 N NA C2orf29 TBC1D8,RPL31,C2orf29 IMR90 Hi-C 24141950 C2orf29 28176 593 chr2 102096168 102097440 102096400 N NA RFX8 MAP4K4 IMR90 Hi-C 24141950 RFX8 5003 594 chr2 102134482 102136035 102135359 N NA RFX8 MAP4K4,RFX8,CREG2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RFX8 43317 595 chr2 109647414 109649438 109648413 Y LIMS1,RANBP2 NA MALL,EDAR IMR90 Hi-C 24141950 CCDC138 244195 596 chr2 111956809 111958671 111957960 N NA NA BCL2L11 IMR90 Hi-C 24141950 BCL2L11 78318 597 chr2 113914349 113915364 113914888 N NA PSD4 IL1RN,LOC654433,PAX8,PSD4 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PSD4 16196 598 chr2 113924360 113925624 113925267 N NA PSD4 PSD4 K562 ChIA-PET 22265404 PSD4 5936 599 chr2 118942004 118945236 118943981 N NA NA NA NA NA NA INSIG2 95954 600 chr2 119067052 119069117 119067976 N NA NA NA NA NA NA INSIG2 221002 601 chr2 122892910 122894213 122893814 N NA NA NA NA NA NA TSN 379789 602 chr2 122942387 122944279 122943236 N NA NA NA NA NA NA TSN 429266 603 chr2 12590352 12593060 12591984 N NA NA LPIN1,MIR4262,TRIB2 IMR90 Hi-C 24141950 TRIB2 263938 604 chr2 12653236 12656075 12655117 N NA NA LPIN1,LOC100506474 IMR90 Hi-C 24141950 TRIB2 200923 605 chr2 127783036 127783587 127783331 N NA NA NA NA NA NA BIN1 81316 606 chr2 128131381 128146864 128145674 N NA MAP3K2 IWS1,CYP27C1 IMR90 Hi-C 24141950 MAP3K2 30576 607 chr2 129170137 129172404 129171711 N NA NA NA NA NA NA HS6ST1 93966 608 chr2 129229590 129232362 129231615 N NA NA HS6ST1 IMR90 Hi-C 24141950 HS6ST1 153419 609 chr2 129467157 129469271 129468095 N NA NA UGGT1,HS6ST1 IMR90 Hi-C 24141950 HS6ST1 390986 610 chr2 129470987 129476373 129473073 N NA NA HS6ST1 IMR90 Hi-C 24141950 HS6ST1 394816 611 chr2 129489449 129495683 129490781,129492322 Y,Y NA;NA NA HS6ST1,UGGT1 IMR90 Hi-C 24141950 HS6ST1 413278 612 chr2 129817990 129819843 129818871 N NA NA NA NA NA NA HS6ST1 741819 613 chr2 131555031 131556232 131555485 N NA NA PLEKHB2,FAM168B K562,MCF7 ChIA-PET 22265404 FAM168B 294772 614 chr2 134877826 134879404 134878646 N NA NA NA NA NA NA MGAT5 132426 615 chr2 136765236 136767436 136765841 Y UBXN4,CXCR4,CXCR4 DARS NA NA NA NA DARS 22014 616 chr2 136887773 136896060 136889214,136894232 Y,Y UBXN4,CXCR4,CXCR4;UBXN4,CXCR4,CXCR4 CXCR4 CXCR4 K562 ChIA-PET 22265404 CXCR4 12048 617 chr2 137138459 137140573 137140006 Y CXCR4,CXCR4 NA NA NA NA NA CXCR4 262734 618 chr2 154363742 154367040 154365714 N NA RPRM NA NA NA NA RPRM 28420 619 chr2 154447842 154450415 154449414 N NA NA NA NA NA NA RPRM 112520 620 chr2 157198344 157199775 157199045 N NA NA GPD2,GALNT5 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ACVR1 1532599 621 chr2 157257162 157257865 157257500 N NA NA NR4A2,GALNT5,GPD2 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 ACVR1 1474509 622 chr2 160146282 160147477 160147013 N NA WDSUB1 WDSUB1 MCF7,K562 ChIA-PET 22265404 WDSUB1 3046 623 chr2 16409051 16410194 16409522 N NA NA NA NA NA NA MYCNOS 327206 624 chr2 16580428 16624052 16619423,16616561 N,N NA;NA NA NA NA NA NA MYCNOS 498583 625 chr2 165873855 165875160 165874865 N NA NA SCN2A,SCN3A IMR90 Hi-C 24141950 SCN3A 185417 626 chr2 165909594 165913094 165911526 N NA NA NA NA NA NA SCN3A 147483 627 chr2 165914053 165916036 165915292 N NA NA NA NA NA NA SCN3A 144541 628 chr2 168148609 168149923 168149147 N NA NA NA NA NA NA STK39 954182 629 chr2 170995707 170997451 170996532 N NA NA NA NA NA NA UBR3 311689 630 chr2 173099189 173100781 173099870 N NA NA ITGA6 IMR90 Hi-C 24141950 DLX2 131711 631 chr2 175357219 175358872 175358048 Y WIPF1,CIR1 NA GPR155 K562,MCF7 ChIA-PET 22265404 CIR1 96776 632 chr2 179058150 179059485 179059186 N NA NA MIR548N IMR90 Hi-C 24141950 RBM45 80968 633 chr2 182258631 182265498 182259816 N NA NA NA NA NA NA ITGA4 56121 634 chr2 182274434 182277384 182275923 N NA ITGA4 NA NA NA NA ITGA4 44235 635 chr2 182303678 182312519 182305897,182312034,182309603 N,N,N NA;NA;NA ITGA4 NA NA NA NA ITGA4 9100 636 chr2 182654840 182656553 182655599 N NA NA SSFA2,PPP1R1C MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 SSFA2 99919 637 chr2 182818127 182819957 182819122 N NA PPP1R1C PPP1R1C MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 PPP1R1C 30594 638 chr2 196077126 196079897 196079075 N NA NA NA NA NA NA SLC39A10 441635 639 chr2 196350272 196353635 196351940 Y NA NA DNAH7,SLC39A10 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SLC39A10 167897 640 chr2 196398275 196400017 196399268 N NA NA SLC39A10 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 SLC39A10 121515 641 chr2 196400522 196402027 196401176 Y NA NA SLC39A10 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 SLC39A10 119505 642 chr2 196422686 196427179 196424409 Y SLC39A10 NA SLC39A10 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 SLC39A10 94353 643 chr2 197040118 197042234 197040988 N NA STK17B NA NA NA NA STK17B 3782 644 chr2 200093152 200095459 200094087 N NA NA NA NA NA NA SATB2 240530 645 chr2 202828997 202829947 202829595 N NA NA CDK15,SUMO1,ALS2,FZD7,NOP58 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ALS2 183102 646 chr2 204553996 204555635 204554963 N NA CD28 RAPH1,CD28 IMR90 Hi-C 24141950 CD28 15563 647 chr2 214090038 214107865 214092338,214097969,214103994,214099770,214094520 N,Y,N,N,N NA;IKZF2,IKZF2;NA;NA;NA NA ABCA12,IKZF2,BARD1,SPAG16 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 IKZF2 73705 648 chr2 217471032 217472558 217471577 N NA IGFBP2 DIRC3,MARCH4,RPL37A,IGFBP2,TNS1,PKI55 IMR90 Hi-C 24141950 IGFBP2 25569 649 chr2 217483056 217485630 217484393 N NA IGFBP2 DIRC3,IGFBP2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 IGFBP2 12497 650 chr2 224351644 224354771 224353785 N NA NA NA NA NA NA WDFY1 455281 651 chr2 224514555 224515441 224514968 N NA NA AP1S3,ACSL3 IMR90 Hi-C 24141950 WDFY1 294611 652 chr2 231466754 231468348 231467510 Y GPR55,SP110,SP110,SP140,SP140L,SP100,SP100 NA SP140,SP110,CAB39,SP100,SP140L IMR90 Hi-C 24141950 CAB39 109209 653 chr2 231521581 231527286 231524223,231526547 Y,N GPR55,SP110,SP140,SP140L,CAB39;NA NA CAB39 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CAB39 50271 654 chr2 232409588 232411146 232410335 N NA LINC00471 NMUR1,LINC00471,C2orf57,PDE6D,ARMC9,SNORD20,NCL,SNORA75 IMR90 Hi-C 24141950 LINC00471 30538 655 chr2 232525517 232528673 232527153 Y DIS3L2 PTMA COPS7B,PTMA IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 PTMA 44562 656 chr2 232546958 232555823 232549735,232547277 N,Y NA;PTMA PTMA PTMA,PDE6D K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 PTMA 17412 657 chr2 235055914 235058226 235056366 N NA NA ARL4C,SH3BP4,SPP2,TRPM8 IMR90 Hi-C 24141950 MSL3P1 278859 658 chr2 235198126 235201857 235199492,235201320 Y,N ARL4C;NA NA TRPM8,ARL4C IMR90 Hi-C 24141950 ARL4C 203836 659 chr2 235333161 235337013 235335685 Y ARL4C NA SPP2,TRPM8 IMR90 Hi-C 24141950 ARL4C 68680 660 chr2 235345768 235347134 235347028 N NA NA NA NA NA NA ARL4C 58559 661 chr2 235367633 235369547 235368411 N NA ARL4C SH3BP4,TRPM8 IMR90 Hi-C 24141950 ARL4C 36146 662 chr2 235371345 235374047 235372829 Y ARL4C ARL4C NA NA NA NA ARL4C 31646 663 chr2 23603095 23604891 23603904 N NA NA KLHL29 MCF7 ChIA-PET 22265404 ATAD2B 545045 664 chr2 237453578 237460326 237455018 N NA NA IQCA1,CXCR7 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 COPS8 533758 665 chr2 237863780 237866210 237865264 N NA NA IQCA1 IMR90 Hi-C 24141950 COPS8 127874 666 chr2 237876090 237878703 237876831 N NA NA IQCA1,CXCR7 IMR90 Hi-C 24141950 COPS8 115381 667 chr2 238067301 238070946 238067881 N NA NA COL6A3,COPS8,MLPH,LRRFIP1,PRLH IMR90 Hi-C 24141950 COPS8 73217 668 chr2 238380306 238385004 238384249 N NA NA LRRFIP1,MLPH,COL6A3,RAB17,COPS8,PRLH IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LRRFIP1 151220 669 chr2 240464899 240468478 240467045 N NA NA LOC150935,HDAC4,MIR4440,NDUFA10 IMR90 Hi-C 24141950 HDAC4 142256 670 chr2 240469269 240482609 240470341,240475272,240477564,240480008 N,N,N,N NA;NA;NA;NA NA NDUFA10,LOC150935 IMR90 Hi-C 24141950 HDAC4 146626 671 chr2 240520940 240525961 240521968,240523998 N,N NA;NA NA HDAC4 IMR90 Hi-C 24141950 HDAC4 198297 672 chr2 240542920 240550594 240545052,240547559 N,N NA;NA NA HDAC4,LOC150935,NDUFA10 IMR90 Hi-C 24141950 HDAC4 220277 673 chr2 240672922 240674360 240673531 N NA NA NA NA NA NA NDUFA10 290459 674 chr2 24712529 24715332 24713963 N NA NA CENPO,NCOA1 IMR90 Hi-C 24141950 NCOA1 92014 675 chr2 25431562 25432875 25431732 N NA DNMT3A NA NA NA NA DNMT3A 42309 676 chr2 37550760 37552803 37551527 N NA PRKD3 QPCT,FAM82A1,PRKD3,EIF2AK2,C2orf56 IMR90 Hi-C 24141950 PRKD3 6538 677 chr2 38151386 38153513 38152575 N NA NA CDC42EP3,PRKG2,CYP1B1-AS1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,19890323 ATL2 450919 678 chr2 38606922 38608524 38607703 Y ATL2 ATL2 NA NA NA NA ATL2 2490 679 chr2 38853001 38854313 38853690 N NA HNRPLL HNRPLL,GALM,SRSF7 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 HNRPLL 22823 680 chr2 38870422 38872361 38870990 N NA HNRPLL GALM,HNRPLL IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 HNRPLL 40244 681 chr2 393479 394810 394100 Y SH3YL1 NA NA NA NA NA ACP1 128610 682 chr2 43035984 43038621 43037660 Y NA NA THADA,ZFP36L2,LOC100129726,HAAO,PLEKHH2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 MTA3 240313 683 chr2 43187680 43190152 43188770 N NA NA ZFP36L2,LOC100129726,THADA IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZFP36L2 263593 684 chr2 43285680 43287209 43286876 N NA NA ZFP36L2,LOC100129726,THADA IMR90 Hi-C 24141950 ZFP36L2 166536 685 chr2 43362752 43365327 43364201 Y ZFP36L2,THADA,THADA NA THADA,LOC100129726,ZFP36L2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ZFP36L2 88418 686 chr2 56156537 56162255 56161615 N NA EFEMP1 NA NA NA NA EFEMP1 5239 687 chr2 56177467 56180502 56179677 N NA EFEMP1 EFEMP1 IMR90 Hi-C 24141950 EFEMP1 26169 688 chr2 5768564 5771529 5769732 N NA NA NA NA NA NA CMPK2 1234421 689 chr2 5799440 5803353 5801635 N NA NA NA NA NA NA CMPK2 1202597 690 chr2 5807134 5816312 5809023,5813487 N,N NA;NA NA NA NA NA NA CMPK2 1189638 691 chr2 59540070 59542961 59540955 N NA NA BCL11A IMR90 Hi-C 24141950 FANCL 1071555 692 chr2 60111841 60116942 60114041 N NA NA NA NA NA NA BCL11A 663691 693 chr2 60316925 60335402 60327414,60322429,60332206 Y,N,Y NA;NA;NA NA NA NA NA NA BCL11A 445231 694 chr2 60375375 60377347 60376196 N NA NA NA NA NA NA BCL11A 403286 695 chr2 61990164 61992586 61991490 Y NA NA XPO1,FAM161A IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 FAM161A 88692 696 chr2 62407192 62410676 62408615 N NA B3GNT2 COMMD1,B3GNT2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 B3GNT2 12586 697 chr2 62535950 62537561 62536933 Y NA NA COMMD1 IMR90 Hi-C 24141950 B3GNT2 112688 698 chr2 64976991 64979175 64978362 Y CEP68 NA SERTAD2,LOC339807,AFTPH IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SERTAD2 95945 699 chr2 64993924 64995687 64995272 N NA NA SERTAD2,LOC339807 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SERTAD2 112878 700 chr2 65172320 65175377 65173518 Y AFTPH,SERTAD2 SLC1A4 SERTAD2,AFTPH,LOC339807,LOC400958,SLC1A4,CEP68,ACTR2 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SLC1A4 40202 701 chr2 65661809 65664966 65663555 N NA SPRED2 SPRED2,CEP68,ACTR2 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 SPRED2 2153 702 chr2 66312048 66313119 66312291 N NA NA NA NA NA NA SPRED2 652392 703 chr2 69133359 69137584 69135423,69137294,69134102 N,N,N NA;NA;NA NA ARHGAP25,APLF,FBXO48,BMP10 IMR90 Hi-C 24141950 ANTXR1 102692 704 chr2 69138296 69143693 69139280,69142806 N,N NA;NA NA ARHGAP25,APLF,FBXO48,BMP10,PROKR1 IMR90 Hi-C 24141950 ANTXR1 96583 705 chr2 69920553 69921431 69921413 N NA AAK1 AAK1,ANXA4,NFU1,GMCL1,GFPT1 IMR90 Hi-C 24141950 AAK1 49576 706 chr2 74209691 74249258 74212345 N NA TET3 DGUOK,TET3,C2orf78,STAMBP,BOLA3,MOB1A,MTHFD2,BOLA3-AS1,ACTG2 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 TET3 24192 707 chr2 75004322 75006416 75005236 N NA NA HK2 IMR90 Hi-C 24141950 HK2 53366 708 chr2 85115354 85116499 85116176 Y C2orf89,TMSB10 NA TMSB10 MCF7 ChIA-PET 22265404 KCMF1 81732 709 chr2 85121352 85122431 85122038 N NA NA DNAH6,TMSB10 IMR90 Hi-C 24141950 KCMF1 75800 710 chr2 85644111 85649011 85645708,85647919 N,N NA;NA CAPG ELMOD3,GGCX,MAT2A MCF7 ChIA-PET 22265404 CAPG 2914 711 chr2 86225949 86227024 86226578 Y NA LOC90784 NA NA NA NA LOC90784 23967 712 chr2 8683475 8684241 8683925 N NA NA LOC100506274,ID2,LOC339788,LINC00299 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ID2 137872 713 chr2 8817811 8820011 8819056 N NA ID2 NA NA NA NA ID2 2102 714 chr2 95872632 95874532 95873160 N NA ZNF514,ZNF2 ZNF2 MCF7 ChIA-PET 22265404 ZNF2 41449 715 chr2 96191324 96193305 96192539 N NA NA NA NA NA NA FAHD2A 122876 716 chr2 96987398 96988225 96987719 N NA SNRNP200,ITPRIPL1,NCAPH SNRNP200 MCF7 ChIA-PET 22265404 ITPRIPL1 2837 717 chr2 99383093 99389987 99384857,99388488 N,N NA;NA MGAT4A MGAT4A MCF7 ChIA-PET 22265404 MGAT4A 35504 718 chr20 1782741 1785227 1784427 N NA LOC100289473 LOC100289473,SIRPA,PDYN,STK35 IMR90 Hi-C 24141950 LOC100289473 22349 719 chr20 21080442 21081787 21081085 N NA PLK1S1 PLK1S1,NKX2-2 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 PLK1S1 24837 720 chr20 21526863 21529637 21527023,21529121 N,Y NA;NA NA NA NA NA NA NKX2-4 148816 721 chr20 2187223 2188526 2188243 N NA NA PDYN,TGM3 IMR90 Hi-C 24141950 STK35 104695 722 chr20 23267255 23287043 23285911,23283120 N,N NA;NA NXT1 THBD,SSTR4 IMR90 Hi-C 24141950 NXT1 44330 723 chr20 23288144 23290910 23289768 N NA NXT1 SSTR4,CD93 IMR90 Hi-C 24141950 NXT1 40463 724 chr20 24123033 24127299 24124485 N NA NA FLJ33581 IMR90 Hi-C 24141950 CST3 504459 725 chr20 24369366 24371066 24370208 N NA NA NA NA NA NA C20orf3 602359 726 chr20 2504892 2506401 2505563 N NA ZNF343 TMC2 IMR90 Hi-C 24141950 ZNF343 15114 727 chr20 25070232 25073192 25071547,25072965 Y,N GINS1;NA ACSS1 VSX1,ACSS1,ENTPD6,PYGB IMR90 Hi-C 24141950 ACSS1 31414 728 chr20 31259608 31262405 31261362 N NA C20orf203 C20orf112,COMMD7,DNMT3B IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 C20orf203 19825 729 chr20 34651914 34653239 34652623 Y NA LOC647979 LOC647979,PHF20,SCAND1,C20orf152,EPB41L1 MCF7,K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 LOC647979 13032 730 chr20 34658338 34659271 34658571 Y EPB41L1 LOC647979 LOC647979,C20orf152,EPB41L1,PHF20 IMR90 Hi-C 24141950 LOC647979 19456 731 chr20 37876694 37880032 37878241 N NA NA NA NA NA NA DHX35 285713 732 chr20 39061568 39062662 39062163 N NA NA LOC339568 IMR90 Hi-C 24141950 TOP1 594800 733 chr20 39508606 39511435 39511044,39509047 N,N NA;NA NA NA NA NA NA TOP1 146027 734 chr20 39558924 39561478 39560196 N NA NA NA NA NA NA TOP1 95984 735 chr20 39944758 39947588 39946121 N NA ZHX3 ZHX3,IQGAP1,PLCG1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404,19890323 ZHX3 16019 736 chr20 4018591 4019900 4018846 Y PANK2,PANK2,PANK2,RNF24,RNF24 RNF24 RNF24,CENPB,PANK2 IMR90 Hi-C 24141950 RNF24 22375 737 chr20 40320625 40323485 40321747 N NA NA CHD6 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 CHD6 73492 738 chr20 4062091 4069055 4063507 N NA NA RNF24,PANK2,MAVS,MIR103B2,LOC728228,CDC25B,C20orf29,SMOX,ADRA1D IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 SMOX 60395 739 chr20 49099477 49100800 49100252 Y TMEM189,CEBPB,PTPN1 PTPN1 LOC284751,TMEM189-UBE2V1,MIR645,FAM65C,PTPN1,PARD6B,UBE2V1,SNAI1,CEBPB IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 PTPN1 26091 740 chr20 49267435 49269024 49268455 N NA NA PTPN1,PARD6B,FAM65C,BCAS4,ADNP IMR90 Hi-C 24141950 PARD6B 79057 741 chr20 5058244 5059930 5059099 N NA C20orf30,PCNA,CDS2 NA NA NA NA C20orf30 33803 742 chr20 52204820 52210208 52209139 N NA ZNF217 SUMO1P1,BCAS1,ZNF217,CSRNP3,BMP7,SULF2,ZMYND8 IMR90,MCF7 Hi-C,ChIA-PET 24141950,19890323,22265404 ZNF217 5184 743 chr20 52225798 52226862 52226335 N NA ZNF217 ZNF217,BCAS1 IMR90 Hi-C 24141950 ZNF217 26162 744 chr20 52239135 52240865 52240116 Y ZNF217 ZNF217 SUMO1P1,BMP7,BCAS1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF217 39499 745 chr20 52258541 52260859 52259606 N NA NA SUMO1P1,BCAS1 IMR90 Hi-C 24141950 ZNF217 58905 746 chr20 52294058 52295689 52294758 Y NA NA BCAS1,SUMO1P1,BMP7 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF217 94422 747 chr20 52531299 52532939 52532290 N NA NA SUMO1P1,BMP7,ZNF217 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PFDN4 291563 748 chr20 55468224 55469085 55468509 N NA NA NA NA NA NA TFAP2C 263866 749 chr20 55572306 55581284 55575943,55578242,55579553 N,N,N NA;NA;NA NA TFAP2C IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TFAP2C 367948 750 chr20 56026081 56027722 56027169 Y NA NA MIR5095 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 PMEPA1 258870 751 chr20 56346964 56351792 56347755 N NA NA PMEPA1,PPP4R1L IMR90,Islet Hi-C,4C 24141950,24413736 PMEPA1 60372 752 chr20 56365456 56368566 56365570 N NA NA PPP4R1L,PMEPA1,ZBP1 Islet,IMR90 4C,Hi-C 24413736,24141950 PMEPA1 78864 753 chr20 56389049 56390261 56389713 N NA NA PMEPA1,ZBP1 IMR90 Hi-C 24141950 PMEPA1 102457 754 chr20 56403911 56406801 56405026 N NA NA PMEPA1 IMR90 Hi-C 24141950 PMEPA1 117319 755 chr20 56410640 56416861 56412701 N NA NA PMEPA1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PMEPA1 124048 756 chr20 56442840 56444756 56443923 N NA NA C20orf85,PMEPA1,PPP4R1L IMR90,MCF7,Islet Hi-C,ChIA-PET,4C 24141950,22265404,24413736 PMEPA1 156248 757 chr20 56505632 56510078 56507795 N NA NA CTCFL,ZBP1,PMEPA1,PCK1,C20orf85 IMR90 Hi-C 24141950 PMEPA1 219040 758 chr20 56573773 56575137 56574718 N NA NA PMEPA1,ZBP1,C20orf85 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 PMEPA1 287181 759 chr20 57734322 57737991 57735102 Y NA ZNF831 NA NA NA NA ZNF831 28084 760 chr20 57738573 57741479 57739795 N NA ZNF831 ZNF831,SLMO2-ATP5E,GNAS-AS1,GNAS IMR90 Hi-C 24141950 ZNF831 24596 761 chr20 58975454 58984497 58977971,58984256 N,N NA;NA NA NA NA NA NA LOC284757 261906 762 chr20 59092016 59095327 59093933 N NA NA NA NA NA NA LOC284757 378468 763 chr20 59099719 59106199 59102933 N NA NA NA NA NA NA LOC284757 386171 764 chr20 59200313 59202620 59201795 N NA NA NA NA NA NA LOC284757 486765 765 chr20 59335084 59338036 59336197 N NA NA LOC284757 IMR90 Hi-C 24141950 CDH4 489446 766 chr20 59394863 59397507 59395837 N NA NA LOC284757 IMR90 Hi-C 24141950 CDH4 429975 767 chr20 59442842 59445592 59444208 N NA NA LOC284757 IMR90 Hi-C 24141950 CDH4 381890 768 chr20 59693223 59695482 59694031 N NA NA C20orf197,LOC284757 IMR90 Hi-C 24141950 CDH4 132000 769 chr21 15399375 15400144 15399619 N NA ANKRD20A11P NA NA NA NA ANKRD20A11P 46610 770 chr21 15435977 15437418 15436395 N NA NA NA NA NA NA ANKRD20A11P 83212 771 chr21 15448546 15450074 15448956 N NA NA NA NA NA NA ANKRD20A11P 95781 772 chr21 27189589 27191516 27190758 N NA NA CYYR1 IMR90 Hi-C 24141950 ATP5J 81624 773 chr21 34303758 34305853 34305079 N NA NA C21orf62,OLIG1,C21orf54,IFNGR2 IMR90,H1ESC Hi-C,5C 24141950,22955621 C21orf49 159347 774 chr21 34584328 34585312 34584645 N NA IFNAR2 IFNAR1,TMEM50B,IFNGR2,IFNAR2,IL10RB,LOC100288432 IMR90 Hi-C 24141950 IFNAR2 16919 775 chr21 34587385 34588901 34588090 Y NA IFNAR2,IL10RB IFNAR2,IL10RB,LOC100288432,TMEM50B,IFNGR2 IMR90,GM12878 Hi-C,5C 24141950,22955621 IFNAR2 13330 776 chr21 36475121 36476051 36475553 Y NA NA RUNX1,SETD4 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 RUNX1 53526 777 chr21 36510481 36512022 36511264 N NA NA RUNX1,CLIC6,SETD4,LOC100506385 IMR90 Hi-C 24141950 RUNX1 88886 778 chr21 38933119 38937737 38936270 Y TTC3,DYRK1A,DYRK1A NA DSCR3,DSCR9,DYRK1A,KCNJ6 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 DYRK1A 193260 779 chr21 40233680 40235415 40234079 N NA NA LINC00114,ETS2,PSMG1,BRWD1 IMR90 Hi-C 24141950 ETS2 56449 780 chr21 40351133 40354639 40353060,40351390 N,N NA;NA NA ETS2,WRB,LINC00114 IMR90,HELA Hi-C,5C 24141950,22955621 ETS2 173902 781 chr21 40355439 40361446 40357967 Y ETS2 NA ETS2,WRB,LINC00114 IMR90,HELA Hi-C,5C 24141950,22955621 ETS2 178208 782 chr21 40375832 40378237 40376762 N NA NA ETS2,LINC00114 IMR90 Hi-C 24141950 PSMG1 177203 783 chr21 42484678 42486295 42485352 Y NA NA NA NA NA NA BACE2 53433 784 chr21 43607275 43609016 43608509 N NA NA ABCG1,TFF3,TFF2,RSPH1 IMR90 Hi-C 24141950 ZNF295 176779 785 chr21 46969925 46972535 46970885 N NA SLC19A1 SLC19A1,LOC100129027,PCBP3 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 SLC19A1 7540 786 chr21 47033264 47036578 47035463 Y NA NA PCBP3,POFUT2,SLC19A1,COL18A1,LOC100129027,ADARB1 IMR90 Hi-C 24141950 SLC19A1 70879 787 chr21 47050984 47052654 47052290 N NA NA PCBP3,LOC100129027,SLC19A1 IMR90 Hi-C 24141950 SLC19A1 88599 788 chr21 47393320 47395010 47394044 Y LSS,COL6A2,C21orf56,COL6A1 NA COL6A1 K562 ChIA-PET 22265404 FTCD 180471 789 chr22 17699154 17701056 17700344 N NA CECR1 NA NA NA NA CECR1 8375 790 chr22 23798561 23800799 23799326 N NA NA NA NA NA NA IGLL1 121696 791 chr22 23862420 23866793 23863770,23866153 N,N NA;NA NA ZDHHC8P1 IMR90 Hi-C 24141950 IGLL1 55702 792 chr22 25800305 25803337 25801395 N NA LRP5L,CRYBB2P1 SEZ6L,CRYBB2P1,LRP5L,ADRBK2,MYO18B IMR90 Hi-C 24141950 LRP5L 22761 793 chr22 29207297 29221432 29207958 Y EMID1 CCDC117,XBP1 XBP1,CHEK2,HSCB,C22orf31,ZNRF3,KREMEN1,TTC28,TTC28-AS1,EMID1,CCDC117 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 XBP1 10737 794 chr22 29595526 29599869 29598740 N NA EMID1 NA NA NA NA EMID1 2084 795 chr22 29810802 29811805 29811371 N NA AP1B1 THOC5 IMR90 Hi-C 24141950 AP1B1 26230 796 chr22 36461318 36462975 36462380 N NA RBFOX2 RBFOX2,APOL3,APOL6,MCM5,MB,APOL5 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RBFOX2 36733 797 chr22 36801042 36802683 36801715 N NA MYH9 MYH9,FOXRED2,TXN2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 MYH9 16979 798 chr22 41047423 41051877 41047834 Y NA MKL1 ST13,MKL1,MCHR1,ADSL,SLC25A17,DNAJB7,XPNPEP3 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 MKL1 14733 799 chr22 41123021 41125602 41125045,41125000 N,N NA;NA NA XPNPEP3,MKL1,MCHR1,SLC25A17 IMR90 Hi-C 24141950 SLC25A17 89790 800 chr22 41127397 41129062 41128337 N NA NA XPNPEP3,MKL1,MCHR1,SLC25A17 IMR90 Hi-C 24141950 SLC25A17 86330 801 chr22 41416902 41419932 41418386 N NA NA ST13,RBX1,MIR1281,EP300 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 EP300 68682 802 chr22 42738863 42741335 42739824 N NA NA TCF20,LOC388906,NFAM1,CYP2D6,LOC100132273,C22orf32,NDUFA6 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC388906 73104 803 chr22 42743072 42744451 42743467 N NA NA NFAM1,CYP2D6,LOC100132273,TCF20,C22orf32,NDUFA6,LOC388906 IMR90 Hi-C 24141950 LOC388906 77313 804 chr22 42839352 42841991 42840273 Y POLDIP3,C22orf32,TCF20,RRP7A,NFAM1 NA MEI1,TCF20,NDUFA6,LOC100132273,C22orf32,CYP2D6,NFAM1,WBP2NL,RNU12,POLDIP3,FAM109B,NAGA IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RRP7A 73838 805 chr22 44845961 44855084 44851588 N NA LDOC1L PARVB,SAMM50,KIAA1644,LINC00207,PARVG,LINC00229,LDOC1L IMR90 Hi-C 24141950 LDOC1L 38921 806 chr22 46971057 46978839 46972892 N NA CELSR1,GRAMD4 TRMU,GRAMD4,CELSR1 IMR90 Hi-C 24141950 CELSR1 37990 807 chr22 46987868 46995868 46989478 Y TBC1D22A,CERK,GRAMD4 GRAMD4 GRAMD4,CELSR1 IMR90 Hi-C 24141950 GRAMD4 26790 808 chr22 46999280 47001953 47000456 N NA GRAMD4 CELSR1,GRAMD4 IMR90 Hi-C 24141950 GRAMD4 20705 809 chr22 47007726 47010962 47009708 N NA GRAMD4 NA NA NA NA GRAMD4 11696 810 chr22 49855496 49858321 49856733 N NA NA NA NA NA NA BRD1 360131 811 chr22 49892643 49894148 49893394 N NA NA NA NA NA NA BRD1 324304 812 chr22 49894693 49899143 49897025 N NA NA NA NA NA NA BRD1 319309 813 chr22 50230058 50233361 50232688 Y TUBGCP6,BRD1,ZBED4,CRELD2 BRD1,ZBED4 ZBED4 MCF7,K562 ChIA-PET 22265404 BRD1 11606 814 chr3 10592213 10595464 10594230 N NA NA ATP2B2 IMR90 Hi-C 24141950 SEC13 229355 815 chr3 106021004 106022253 106021613 N NA NA CBLB IMR90 Hi-C 24141950 ALCAM 935447 816 chr3 106543181 106547372 106546005 N NA NA CBLB IMR90 Hi-C 24141950 BBX 694411 817 chr3 107149750 107150847 107149903 N NA NA LOC344595,BBX,LOC100302640 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 BBX 90936 818 chr3 107813651 107820610 107815534,107819020,107819659 N,N,N NA;NA;NA CD47 IFT57,MYH15,CD47 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CD47 3716 819 chr3 107836595 107838631 107837154 N NA CD47 CD47,IFT57,MYH15 IMR90 Hi-C 24141950 CD47 26660 820 chr3 107841793 107857112 107844044,107846298 N,Y NA;CD47 CD47 CD47,IFT57,MYH15 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CD47 31858 821 chr3 111029611 111031629 111030741 N NA NA NA NA NA NA CD96 229297 822 chr3 111042637 111043419 111043285 N NA NA NA NA NA NA CD96 217507 823 chr3 111392550 111394737 111393458 N NA NA CD96,PHLDB2 IMR90 Hi-C 24141950 CD96 131624 824 chr3 112020821 112023075 112021857 N NA NA CD200,BTLA,ATG3,SLC35A5,C3orf52 IMR90 Hi-C 24141950 GCET2 168669 825 chr3 117715398 117716853 117715942 N NA NA NA NA NA NA B4GALT4 1242899 826 chr3 117864304 117867139 117866031 N NA NA NA NA NA NA B4GALT4 1092613 827 chr3 12595298 12596291 12595463 N NA MKRN2 LOC100129480 IMR90 Hi-C 24141950 MKRN2 2303 828 chr3 126700635 126702329 126701806 Y PLXNA1 PLXNA1 CHCHD6,PLXNA1 MCF7,K562 ChIA-PET 22265404 PLXNA1 5108 829 chr3 126921020 126947382 126932463,126935748,126943048,126945849 N,N,N,N NA;NA;NA;NA NA NUP210P1,CHCHD6 IMR90 Hi-C 24141950 PLXNA1 213583 830 chr3 128216114 128217937 128216501 N NA GATA2 GATA2,C3orf27,RUVBL1,EEFSEC,DNAJB8,DNAJB8-AS1,LOC90246 MCF7,K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 GATA2 4084 831 chr3 128398943 128401209 128399657 N NA RPN1,RAB7A RAB7A,RPN1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RPN1 29224 832 chr3 128717299 128718398 128718132 N NA CCDC48 NA NA NA NA CCDC48 2074 833 chr3 130557140 130559630 130558736 N NA ATP2C1 ATP2C1 K562 ChIA-PET 22265404 ATP2C1 9739 834 chr3 13584598 13587814 13586122 N NA FBLN2 HDAC11 MCF7 ChIA-PET 22265404 FBLN2 2811 835 chr3 138552116 138554907 138553825 N NA NA PIK3CB IMR90 Hi-C 24141950 PIK3CB 73915 836 chr3 13935828 13937892 13937032 Y NA NA C3orf19,TMEM43,CHCHD4,XPC,LSM3 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 CHCHD4 228479 837 chr3 142887869 142891876 142889656 N NA CHST2 SLC9A9 IMR90 Hi-C 24141950 CHST2 49251 838 chr3 14318898 14324730 14320397 N NA NA SLC6A6,GRIP2 IMR90 Hi-C 24141950 LSM3 98670 839 chr3 156891251 156895074 156892910 N NA CCNL1 CCNL1,VEPH1,PTX3,LEKR1,LOC339894,LOC100498859 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CCNL1 12769 840 chr3 172247503 172248988 172248304 N NA TNFSF10 TNFSF10,NCEH1 IMR90 Hi-C 24141950 TNFSF10 6206 841 chr3 172308788 172311534 172309653 N NA NA TNFSF10,FNDC3B,NCEH1 IMR90 Hi-C 24141950 TNFSF10 67491 842 chr3 174158216 174160185 174158975 N NA NA NAALADL2 IMR90 Hi-C 24141950 ECT2 1685918 843 chr3 176918614 176920207 176919375 N NA TBL1XR1 NA NA NA NA TBL1XR1 3566 844 chr3 177075420 177079079 177077113 N NA NA TBL1XR1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 TBL1XR1 160372 845 chr3 17942758 17945224 17943618 N NA NA NA NA NA NA LOC339862 109923 846 chr3 17949267 17956174 17951287,17955261 N,N NA;NA NA NA NA NA NA LOC339862 98973 847 chr3 17973599 17979591 17975141,17978667 N,N NA;NA NA NA NA NA NA LOC339862 75556 848 chr3 17986267 17991387 17987706,17990771 N,Y NA;NA NA NA NA NA NA LOC339862 63760 849 chr3 18006029 18007344 18006642 N NA LOC339862 NA NA NA NA LOC339862 47803 850 chr3 18020689 18028802 18020944,18024709 N,Y NA;TBC1D5 LOC339862 SATB1 IMR90 Hi-C 24141950 LOC339862 26345 851 chr3 18336179 18338194 18336708 N NA NA NA NA NA NA SATB1 142071 852 chr3 186626768 186627683 186627138 N NA ST6GAL1 KNG1,ST6GAL1 IMR90 Hi-C 24141950 ST6GAL1 20632 853 chr3 187676118 187677236 187676595 N NA NA BCL6,LPP,LPP-AS2 IMR90 Hi-C 24141950 LPP 194427 854 chr3 188691594 188693510 188692796 N NA NA LOC100131635,RTP2,LPP,BCL6 IMR90 Hi-C 24141950 LPP-AS2 819718 855 chr3 193788152 193789744 193788792 N NA NA HES1,LOC647323,LOC100131551 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 HES1 64187 856 chr3 193973032 193973805 193973401 N NA NA LOC647323,LOC100131551,HES1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 HES1 119101 857 chr3 195846771 195849542 195847577 N NA TFRC LOC401109,C3orf43,PCYT1A,SDHAP2,MIR570,MUC20,TFRC,UBXN7 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 TFRC 37739 858 chr3 196255404 196256232 196255766 Y NA RNF168,WDR53,FBXO45 UBXN7,MUC20,RNF168,C3orf43,PCYT1A,TM4SF19-TCTEX1D2,WDR53,FBXO45,CEP19 IMR90 Hi-C 24141950 RNF168 24765 859 chr3 27517697 27526582 27526027,27525312 N,N NA;NA SLC4A7 NEK10,SLC4A7 IMR90 Hi-C 24141950 SLC4A7 19452 860 chr3 31250106 31257533 31252439,31255577 N,N NA;NA NA NA NA NA NA STT3B 316958 861 chr3 31266324 31270500 31267674 N NA NA GADL1 IMR90 Hi-C 24141950 STT3B 303991 862 chr3 31502714 31504538 31503753 N NA NA NA NA NA NA STT3B 69953 863 chr3 34057637 34061162 34058880 N NA NA NA NA NA NA PDCD6IP 217574 864 chr3 34200175 34202274 34201401 N NA NA NA NA NA NA PDCD6IP 360112 865 chr3 35336463 35339050 35338232 Y ARPP21 NA NA NA NA NA ARPP21 344799 866 chr3 35673815 35680328 35675141 N NA ARPP21 NA NA NA NA ARPP21 3521 867 chr3 36804945 36806567 36805737 N NA DCLK3 NA NA NA NA DCLK3 23593 868 chr3 37258015 37259937 37259133 Y NA LRRFIP2,GOLGA4 LRRFIP2,MLH1,EPM2AIP1,GOLGA4 IMR90 Hi-C 24141950 GOLGA4 24745 869 chr3 37268581 37270770 37269581 N NA GOLGA4 LRRFIP2,GOLGA4,MLH1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 GOLGA4 13912 870 chr3 39334920 39336593 39336119 N NA CX3CR1 WDR48,GORASP1,TTC21A,CSRNP1,XIRP1 IMR90 Hi-C 24141950 CX3CR1 11694 871 chr3 39401863 39405508 39403271 Y WDR48,XIRP1,XIRP1,CCR8,SLC25A38 SLC25A38,RPSA NA NA NA NA SLC25A38 19307 872 chr3 44039450 44041473 44040725 Y NA NA ANO10 IMR90 Hi-C 24141950 ABHD5 307075 873 chr3 44550926 44553350 44552188 N NA ZNF445 ZNF445 K562 ChIA-PET 22265404 ZNF445 31764 874 chr3 45208451 45209492 45209141 Y LIMD1 NA LARS2,CDCP1,CLEC3B,TMEM158 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CLEC3B 140692 875 chr3 45422625 45423814 45423075 N NA LARS2 NA NA NA NA LARS2 6261 876 chr3 45894178 45915215 45911850,45913320 N,N NA;NA LZTFL1 SLC6A20,SACM1L,LZTFL1,FYCO1,CCR1,CCR9,CCR2,LARS2,CLEC3B,CCR5 IMR90 Hi-C 24141950 LZTFL1 10557 877 chr3 57968942 57970307 57969683 Y PDE12,PXK FLNB ARF4,FLNB IMR90 Hi-C 24141950 FLNB 23820 878 chr3 59500383 59501732 59500912 N NA NA NA NA NA NA KCTD6 1022560 879 chr3 59502600 59504869 59503316 N NA NA NA NA NA NA KCTD6 1024777 880 chr3 72131194 72133630 72132371 Y RYBP,FOXP1,EIF4E3,GPR27,EIF4E3,EIF4E3,PROK2 NA NA NA NA NA RYBP 362144 881 chr3 83370526 83373319 83371313 N NA NA NA NA NA NA GBE1 1559576 882 chr4 10163169 10164418 10163659 N NA WDR1 SLC2A9,CLNK,WDR1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 WDR1 44596 883 chr4 109269164 109278894 109276860 N NA NA LEF1,LOC641518 IMR90 Hi-C 24141950 LEF1 179052 884 chr4 109289268 109295846 109291533,109294075,109290213 N,N,N NA;NA;NA NA LEF1,HADH IMR90 Hi-C 24141950 LEF1 199156 885 chr4 109402885 109406536 109405093 N NA NA LEF1,HADH IMR90 Hi-C 24141950 LOC285456 135077 886 chr4 113627263 113628286 113627564 N NA NA NA NA NA NA C4orf21 69112 887 chr4 119511684 119514108 119512849 N NA NA NA NA NA NA METTL14 92466 888 chr4 123072422 123074983 123073473 N NA KIAA1109 KIAA1109 K562 ChIA-PET 22265404 KIAA1109 16775 889 chr4 124365374 124365991 124365773 N NA SPRY1 SPATA5 IMR90 Hi-C 24141950 SPRY1 47418 890 chr4 124520728 124521581 124521312 Y NA NA NA NA NA NA SPRY1 202772 891 chr4 130543597 130545332 130544516 Y NA NA NA NA NA NA C4orf33 528768 892 chr4 132896459 132897895 132897196 N NA NA NA NA NA NA C4orf33 2881630 893 chr4 134065442 134068378 134067981 N NA NA NA NA NA NA C4orf33 4050613 894 chr4 13982529 13984289 13983822 Y NA NA LOC441009,CPEB2,BOD1L IMR90 Hi-C 24141950 BOD1L 353201 895 chr4 140096749 140100461 140097874,140099139 N,N NA;NA ELF2 ELF2,NAA15,C4orf49 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ELF2 36143 896 chr4 140339662 140343462 140340778 N NA RAB33B RAB33B,SETD7,ELF2,NAA15 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 RAB33B 31499 897 chr4 140359689 140363523 140362266 N NA RAB33B SETD7,RAB33B IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RAB33B 11438 898 chr4 141163929 141164863 141164497 Y MAML3 NA MAML3,SCOC,LOC100129858,MGST2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ELMOD2 280449 899 chr4 142821720 142823276 142822216 N NA NA NA NA NA NA ZNF330 679671 900 chr4 142832734 142834804 142834173 N NA NA NA NA NA NA ZNF330 690685 901 chr4 145258172 145260833 145259547 N NA NA NA NA NA NA HHIP 306315 902 chr4 152786447 152788803 152787191 N NA NA FAM160A1,PET112,FBXW7 IMR90 Hi-C 24141950 PET112 104272 903 chr4 152999446 153005005 153001318,153004790 N,N NA;NA NA FBXW7 IMR90 Hi-C 24141950 FBXW7 298659 904 chr4 153020459 153023191 153022087 N NA NA FBXW7,SH3D19,RPS3A IMR90 Hi-C 24141950 FBXW7 280473 905 chr4 153038332 153040388 153039180 N NA NA PET112 IMR90 Hi-C 24141950 FBXW7 263276 906 chr4 153070673 153072328 153071362 Y NA NA PET112 IMR90 Hi-C 24141950 FBXW7 231336 907 chr4 154035033 154037568 154037138 N NA NA KIAA0922,ARFIP1 IMR90 Hi-C 24141950 MND1 228233 908 chr4 154371318 154372788 154371890 N NA KIAA0922 NA NA NA NA KIAA0922 14710 909 chr4 15766423 15767765 15767039 N NA NA CD38,FGFBP2,BST1 IMR90 Hi-C 24141950 FAM200B 83071 910 chr4 1580329 1582302 1581675 N NA NA RNF212,TMED11P,KIAA1530,FAM53A,SLBP,CTBP1,C4orf42 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 FAM53A 103686 911 chr4 160023300 160024769 160024113 N NA NA C4orf45,FNIP2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RAPGEF2 164229 912 chr4 169936402 169938190 169937356 N NA CBR4 CBR4,SH3RF1,NEK1 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 CBR4 4934 913 chr4 170681531 170683974 170683198 N NA C4orf27 NA NA NA NA C4orf27 2438 914 chr4 184327806 184328768 184328468 Y CDKN2AIP CDKN2AIP WWC2,ODZ3,C4orf38,CLDN24,CLDN22,CDKN2AIP IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CDKN2AIP 37021 915 chr4 185188851 185189531 185189362 N NA NA IRF2,CASP3,LOC728175,CCDC111,MLF1IP IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 IRF2 206195 916 chr4 185457571 185459386 185458745 N NA NA IRF2 MCF7,K562 ChIA-PET 22265404 IRF2 61845 917 chr4 190692271 190694065 190693054 N NA NA NA NA NA NA FRG1 167909 918 chr4 27881 29608 29068 N NA NA ZNF718 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 PIGG 463381 919 chr4 3290905 3297390 3294664 N NA RGS12 RGS12 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 RGS12 18484 920 chr4 40266431 40268552 40267303 N NA NA NA NA NA NA RHOH 67904 921 chr4 40302564 40315848 40303908,40308956,40314083 Y,N,Y PDS5A,N4BP2,RHOH;NA;PDS5A,N4BP2,RHOH,RBM47 CHRNA9 N4BP2,LOC344967,RHOH,RBM47,NSUN7,CHRNA9 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 CHRNA9 21498 922 chr4 40318246 40319966 40319093 N NA CHRNA9 N4BP2,RHOH,RBM47,LOC344967,NSUN7,CHRNA9 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 CHRNA9 17380 923 chr4 54957033 54958495 54958083 Y NA CHIC2 SCFD2,CHIC2 IMR90 Hi-C 24141950 CHIC2 26218 924 chr4 561280 576870 570095,573750 N,N NA;NA NA NA NA NA NA ZNF721 67838 925 chr4 65747995 65751357 65749296 N NA NA NA NA NA NA CENPC1 2659899 926 chr4 71577121 71580304 71577586 N NA UTP3,RUFY3 RUFY3 K562 ChIA-PET 22265404 RUFY3 7392 927 chr4 78774150 78775249 78774521 Y CNOT6L CNOT6L,MRPL1 MRPL1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 MRPL1 8556 928 chr4 82568790 82570725 82570254 N NA NA NA NA NA NA RASGEF1B 175729 929 chr4 84138594 84139676 84139068 Y THAP9,LIN54,HPSE,HPSE,HPSE,HELQ,COQ2,AGPAT9,PLAC8,PLAC8 NA PLAC8,COPS4,COQ2 IMR90 Hi-C 24141950 COQ2 66391 930 chr4 9153768 9155986 9154876 Y NA NA NA NA NA NA METTL19 711236 931 chr4 9692903 9694449 9693514 N NA NA NA NA NA NA WDR1 424124 932 chr4 99583791 99585249 99584398 N NA TSPAN5 NA NA NA NA TSPAN5 3979 933 chr5 102089439 102092038 102090934 N NA NA NA NA NA NA PPIP5K2 373219 934 chr5 126564407 126565616 126565257 N NA NA LMNB1 IMR90 Hi-C 24141950 PRRC1 287693 935 chr5 130587875 130590635 130588698 N NA CDC42SE2 CDC42SE2 IMR90 Hi-C 24141950 CDC42SE2 9067 936 chr5 131437700 131438979 131438313 N NA NA PDLIM4,IL3 IMR90 Hi-C 24141950 ACSL6 89939 937 chr5 133387494 133391153 133390244 N NA VDAC1 TCF7,SKP1 IMR90 Hi-C 24141950 VDAC1 46670 938 chr5 133412624 133414821 133414013 Y TCF7,TCF7 TCF7 TCF7 IMR90 Hi-C 24141950 TCF7 35581 939 chr5 133418516 133437023 133422830,133426411,133436221,133428511 N,N,Y,N NA;NA;PPP2CA,PHF15,CDKL3,TCF7,TCF7;NA TCF7 TCF7,SKP1 IMR90 Hi-C 24141950 TCF7 13379 940 chr5 138077719 138078876 138078192 Y NA CTNNA1 CTNNA1,SIL1,HSPA9,MATR3 IMR90 Hi-C 24141950 CTNNA1 10231 941 chr5 138896739 138898844 138897740 Y MATR3,MATR3,DNAJC18,PSD2 TMEM173,UBE2D2 DNAJC18,UBE2D2,SLC23A1,SPATA24,PAIP2,C5orf65,TMEM173,ECSCR,CXXC5 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 TMEM173 34396 942 chr5 139486364 139489217 139487317 N NA PURA,IGIP NRG2,CYSTM1,IGIP IMR90 Hi-C 24141950 PURA 4491 943 chr5 141394639 141396197 141395572 Y DIAPH1,KIAA0141,PCDH12,GNPDA1 RNF14,GNPDA1 GNPDA1,NDFIP1 IMR90 Hi-C 24141950 GNPDA1 2019 944 chr5 141404290 141405354 141404589 Y DIAPH1,FCHSD1 GNPDA1 GNPDA1,NDFIP1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 GNPDA1 11670 945 chr5 141798396 141802142 141800409 N NA NA NDFIP1,SPRY4,FGF1,GNPDA1 IMR90 Hi-C 24141950 SPRY4 93776 946 chr5 141803800 141806975 141805498 N NA NA SPRY4,FGF1,NDFIP1,GNPDA1,RNF14 IMR90 Hi-C 24141950 SPRY4 99180 947 chr5 141811224 141814285 141812361 N NA NA SPRY4,FGF1,NDFIP1 IMR90 Hi-C 24141950 SPRY4 106604 948 chr5 141849753 141851145 141850620 N NA NA SPRY4,GNPDA1,NDFIP1,FGF1 IMR90 Hi-C 24141950 SPRY4 145133 949 chr5 14925446 14926620 14926281 Y NA NA FAM105B,ANKH,FAM105A,LOC100130744 IMR90 Hi-C 24141950 ANKH 53559 950 chr5 149865000 149867103 149865687 N NA RPS14,NDST1 NDST1,RBM22,MYOZ3,SYNPO IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 NDST1 20571 951 chr5 157345622 157347512 157346699 N NA NA CLINT1 IMR90 Hi-C 24141950 CLINT1 59439 952 chr5 159893711 159896122 159894770 N NA SLU7,PTTG1 NA NA NA NA PTTG1 44846 953 chr5 162599917 162601865 162600507 N NA NA NA NA NA NA CCNG1 262712 954 chr5 169728994 169732700 169730312 Y KCNMB1,LCP2 LCP2,LOC257358 LCP2,KCNIP1,C5orf58 IMR90 Hi-C 24141950 LCP2 4172 955 chr5 180115365 180118085 180116540 Y NA NA BTNL8 IMR90 Hi-C 24141950 MGAT1 119052 956 chr5 18745255 18747455 18746026 N NA NA NA NA NA NA FAM134B 2128088 957 chr5 28216002 28218225 28217236 N NA NA NA NA NA NA DROSHA 3314057 958 chr5 3091809 3093293 3092635 N NA NA NA NA NA NA NDUFS6 1290313 959 chr5 32531186 32533008 32532143 N NA NA NA NA NA NA SUB1 52597 960 chr5 34243576 34245525 34244746 N NA NA NA NA NA NA C1QTNF3-AMACR 118943 961 chr5 3885964 3887945 3886715 N NA NA NA NA NA NA KIAA0947 1534862 962 chr5 40409522 40411213 40410337 Y PTGER4,PRKAA1 NA PTGER4 IMR90 Hi-C 24141950 PTGER4 268819 963 chr5 43105373 43106793 43106027 Y NA LOC100132356,ZNF131 LOC153684,LOC100132356,ZNF131 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF131 14849 964 chr5 4530743 4536592 4533007 N NA NA NA NA NA NA KIAA0947 886215 965 chr5 4546735 4551083 4547895,4550901 N,N NA;NA NA NA NA NA NA KIAA0947 871724 966 chr5 4552145 4556508 4553300,4556118 N,N NA;NA NA NA NA NA NA KIAA0947 866299 967 chr5 49739763 49742980 49741393 N NA EMB NA NA NA NA EMB 2529 968 chr5 52019962 52022613 52021424 N NA NA ITGA1 IMR90 Hi-C 24141950 ITGA1 61523 969 chr5 5346909 5348361 5347827 N NA NA ADAMTS16 IMR90 Hi-C 24141950 KIAA0947 74446 970 chr5 61432888 61436752 61434664,61435898 N,N NA;NA NA NA NA NA NA KIF2A 165237 971 chr5 67735705 67739313 67737366 N NA NA NA NA NA NA PIK3R1 224121 972 chr5 68337818 68339336 68338789 Y NA NA NA NA NA NA SLC30A5 50440 973 chr5 69696819 69697941 69697187 N NA NA NA NA NA NA MARVELD2 985880 974 chr5 81074357 81076183 81075425 N NA SSBP2 SSBP2,ZCCHC9,ATG10 IMR90 Hi-C 24141950 SSBP2 27285 975 chr5 81145769 81149759 81148681 Y SSBP2 NA ATG10,SSBP2,ACOT12 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 SSBP2 98697 976 chr5 81642112 81646632 81643333 N NA ATP6AP1L VCAN,HAPLN1 IMR90 Hi-C 24141950 ATP6AP1L 40946 977 chr5 81652143 81657509 81653284 Y RPS23 NA ATP6AP1L,XRCC4,VCAN,TMEM167A IMR90 Hi-C 24141950 ATP6AP1L 50977 978 chr5 81707902 81711632 81711352,81709735,81707908 N,N,N NA;NA;NA NA VCAN,ATP6AP1L IMR90 Hi-C 24141950 ATP6AP1L 106736 979 chr5 81713825 81717021 81715342 N NA NA VCAN,ATP6AP1L IMR90 Hi-C 24141950 ATP6AP1L 112659 980 chr5 86315291 86316705 86316211 Y NA NA NA NA NA NA RASA1 247365 981 chr5 86416998 86419322 86417694 N NA NA MIR4280 K562 ChIA-PET 22265404 RASA1 144748 982 chr5 87797647 87798899 87798392 N NA NA NA NA NA NA LOC100505894 232948 983 chr5 90608768 90611490 90610341 N NA NA GPR98,ARRDC3,LOC100129716 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC100129716 64674 984 chr5 91095 92543 92177 N NA PLEKHG4B PLEKHG4B,SDHA IMR90 Hi-C 24141950 PLEKHG4B 47830 985 chr5 96151059 96153798 96152366 Y LNPEP,ERAP1 ERAP1 ERAP1 K562,MCF7 ChIA-PET 22265404 ERAP1 7167 986 chr5 96527633 96531523 96529221 N NA RIOK2 FLJ35946,RGMB IMR90 Hi-C 24141950 RIOK2 8628 987 chr6 100051384 100052003 100051618 Y NA CCNC,PRDM13 NA NA NA NA PRDM13 2647 988 chr6 100793556 100797000 100794168,100796265 N,N NA;NA NA SIM1 IMR90 Hi-C 24141950 ASCC3 532224 989 chr6 106256925 106259378 106258439 N NA NA ATG5,PRDM1 IMR90 Hi-C 24141950 PREP 405926 990 chr6 106440213 106441100 106440513 Y PRDM1 NA PRDM1,ATG5 IMR90 Hi-C 24141950 ATG5 332595 991 chr6 106442039 106443444 106442802 Y PRDM1 NA PRDM1,ATG5 IMR90 Hi-C 24141950 ATG5 330251 992 chr6 109034478 109036493 109035764 N NA NA FOXO3,LINC00222 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 FOXO3 153452 993 chr6 110360658 110361623 110361183 N NA NA FIG4,AKD1,PPIL6,MICAL1,SMPD2,DDO,METTL24 IMR90 Hi-C 24141950 WASF1 139584 994 chr6 112363686 112365150 112364700 N NA TUBE1 FYN,TRAF3IP2-AS1,TRAF3IP2,REV3L IMR90 Hi-C 24141950 TUBE1 43601 995 chr6 119255033 119258924 119256045 N NA ASF1A,MCM9 NA NA NA NA MCM9 2130 996 chr6 135406684 135410941 135408918,135410211,135407410 N,Y,N NA;NA;NA HBS1L HBS1L,MYB,AHI1 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 HBS1L 30648 997 chr6 13762278 13763414 13763053 Y RNF182 NA NA NA NA NA RANBP9 50482 998 chr6 13765845 13766266 13765896 N NA CCDC90A NA NA NA NA CCDC90A 48526 999 chr6 138056731 138058987 138057727 Y PBOV1,TNFAIP3 NA TNFAIP3 IMR90 Hi-C 24141950 TNFAIP3 129594 1000 chr6 138248145 138250165 138249392 N NA NA IFNGR1,TNFAIP3 IMR90 Hi-C 24141950 TNFAIP3 59564 1001 chr6 14208910 14216229 14211398,14213319,14210034 Y,N,N CD83;NA;NA NA JARID2,DTNBP1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CD83 91423 1002 chr6 14227289 14230433 14228995 N NA NA JARID2,DTNBP1 IMR90 Hi-C 24141950 CD83 109802 1003 chr6 14239930 14242563 14241638 N NA NA JARID2,DTNBP1 IMR90 Hi-C 24141950 CD83 122443 1004 chr6 14270262 14279176 14271476,14275127,14277334 Y,N,Y CD83;NA;CD83 NA JARID2,DTNBP1 IMR90 Hi-C 24141950 CD83 152775 1005 chr6 14289084 14292483 14291662 N NA NA JARID2 IMR90 Hi-C 24141950 CD83 171597 1006 chr6 14352518 14356887 14355542 N NA NA DTNBP1,JARID2 IMR90 Hi-C 24141950 CD83 235031 1007 chr6 14375077 14391472 14376541,14381408,14387216 N,N,N NA;NA;NA NA JARID2,DTNBP1 IMR90 Hi-C 24141950 CD83 257590 1008 chr6 14447562 14456040 14449991,14448145,14453146,14454074 N,N,Y,N NA;NA;NA;NA NA JARID2 IMR90 Hi-C 24141950 CD83 330075 1009 chr6 144536187 144538348 144537475 Y NA NA STX11,SF3B5 MCF7,K562 ChIA-PET 22265404 UTRN 74525 1010 chr6 144605562 144607554 144606353 N NA UTRN UTRN IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 UTRN 5319 1011 chr6 14462656 14469395 14464496 N NA NA JARID2,DTNBP1 IMR90 Hi-C 24141950 CD83 345169 1012 chr6 14508364 14509516 14508659 N NA NA JARID2 IMR90 Hi-C 24141950 CD83 390877 1013 chr6 14710287 14712574 14711427 Y NA NA JARID2,DTNBP1 IMR90 Hi-C 24141950 JARID2 533953 1014 chr6 14729042 14730821 14729576 N NA NA DTNBP1,JARID2 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 JARID2 515706 1015 chr6 14732252 14737101 14735182 Y NA NA DTNBP1,JARID2 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 JARID2 509426 1016 chr6 14902358 14904858 14903701 N NA NA JARID2 IMR90 Hi-C 24141950 JARID2 341669 1017 chr6 14909643 14913148 14911051 Y JARID2 NA JARID2 IMR90 Hi-C 24141950 JARID2 333379 1018 chr6 157007118 157009879 157008238 Y ARID1B NA MIR4466,ARID1B,NOX3 K562,MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 ARID1B 89185 1019 chr6 15735297 15737681 15736147 N NA NA MYLIP IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 DTNBP1 72008 1020 chr6 158650404 158653653 158653113 N NA NA TULP4,TMEM181,DYNLT1,SYTL3 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 GTF2H5 61025 1021 chr6 159290016 159292059 159290800 N NA EZR OSTCP1,C6orf99,EZR K562,MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 EZR 49560 1022 chr6 159527201 159529468 159528460 N NA NA NA NA NA NA TAGAP 61017 1023 chr6 16768768 16769990 16769453 N NA NA ATXN1 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 MYLIP 639451 1024 chr6 21586847 21590254 21588563 Y SOX4 SOX4 LINC00340,CDKAL1 MCF7 ChIA-PET 22265404 SOX4 3718 1025 chr6 24919248 24920556 24919923 N NA NA FAM65B IMR90 Hi-C 24141950 GMNN 144089 1026 chr6 25041104 25042712 25042459 N NA NA FAM65B IMR90 Hi-C 24141950 CMAHP 95339 1027 chr6 25049726 25051868 25050774 Y C6orf62 NA FAM65B,GMNN IMR90 Hi-C 24141950 CMAHP 86183 1028 chr6 25055894 25057260 25056519 N NA NA FAM65B,GMNN IMR90 Hi-C 24141950 CMAHP 80791 1029 chr6 25162972 25169605 25166549 N NA CMAHP CMAHP,FAM65B,LRRC16A IMR90 Hi-C 24141950 CMAHP 24921 1030 chr6 2541802 2544432 2543252 Y SERPINB1 NA C6orf195,LOC100508120,GMDS,MYLK4 IMR90 Hi-C 24141950 WRNIP1 221234 1031 chr6 26321535 26323829 26322885 Y NA BTN3A2 HIST1H1D,HIST1H4F,ABT1,HIST1H4G,HMGN4,HIST1H3F,HIST1H2BH,HIST1H2BI,HIST1H3G,HCG11,HIST1H4I,HIST1H2BK IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 BTN3A2 41569 1032 chr6 27155980 27157151 27156542 N NA HIST1H2BK HIST1H2BO,HIST1H2AM,OR2B2,LOC100507173,HIST1H4J,HIST1H3J,HIST1H2BK,MIR3143,HIST1H2AH,HIST1H2AI,HIST1H3H,HIST1H2BL IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 HIST1H2BK 41343 1033 chr6 27446138 27447989 27447024 Y NA ZNF184 ZNF184,HIST1H2AG,MIR3143,HIST1H4I,HIST1H2BK,HIST1H2BJ,HIST1H2AH,PRSS16,LOC100131289,HIST1H2BN,HIST1H2AK,HIST1H4J,HIST1H4K,HIST1H2AL,HIST1H1B,HIST1H3I,OR2B2,HIST1H3J,HIST1H2BO,HIST1H2AM K562,MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 ZNF184 5241 1034 chr6 27486093 27487646 27487232 N NA ZNF184 LOC100131289,HIST1H2BJ,HIST1H4I,HIST1H2BK,HIST1H2AG,HIST1H2AH,MIR3143,PRSS16 IMR90 Hi-C 24141950 ZNF184 45196 1035 chr6 27654981 27656575 27656114 N NA LOC100507173 LOC100507173,ZNF184 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 LOC100507173 5239 1036 chr6 27721652 27722269 27722057 N NA LOC100131289 HIST1H4I,HIST1H2BK,HIST1H2BJ,HIST1H2AG,HIST1H2AH,MIR3143,LOC100131289,POM121L2,ZNF184,LOC100507173,HIST1H2AM,HIST1H2BO,HIST1H3I,HIST1H4L IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC100131289 7254 1037 chr6 27724858 27725935 27725256 N NA LOC100131289 LOC100131289 MCF7 ChIA-PET 22265404 LOC100131289 3588 1038 chr6 28574033 28575312 28574814 N NA NA NA NA NA NA ZKSCAN3 256342 1039 chr6 28908263 28909588 28909126 N NA TRIM27 TRIM27,LOC401242,ZNF311 IMR90 Hi-C 24141950 TRIM27 16495 1040 chr6 30483280 30485096 30484308 N NA HLA-E,PRR3,GNL1 HLA-E,PPP1R10,MRPS18B,ABCF1,PRR3,GNL1 MCF7,K562 ChIA-PET 22265404 HLA-E 26097 1041 chr6 30781006 30783991 30783383 N NA NA FLOT1,C6orf15,PSORS1C1,TUBB,DDR1,VARS2,DHX16,SFTA2,PPP1R18,NRM,IER3,MUC22 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 IER3 68679 1042 chr6 30801966 30803660 30802576 N NA NA DDR1,FLOT1,IER3,C6orf136,DHX16,C6orf15,PSORS1C1 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 GTF2H4 72317 1043 chr6 31461464 31463204 31462440 N NA MICB,DDX39B ATP6V1G2-DDX39B,DDX39B GM12878,K562 3C 24821768 MICB 2651 1044 chr6 33871314 33874072 33872668 N NA NA NA NA NA NA LEMD2 114408 1045 chr6 34150367 34151398 34150703 Y HMGA1 NA C6orf106,NUDT3,RPS10-NUDT3,PACSIN1,MNF1,ANKS1A,SPDEF,HMGA1,IP6K3,MLN,LEMD2,GRM4,UHRF1BP1,TAF11,SNRPC,C6orf1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 HMGA1 53179 1046 chr6 34191223 34192734 34191876 Y C6orf1,HMGA1 HMGA1,C6orf1 RPS10-NUDT3,NUDT3,C6orf1 MCF7 ChIA-PET 22265404 HMGA1 11843 1047 chr6 3623209 3625347 3623828 N NA NA SLC22A23,BPHL,PXDC1 IMR90 Hi-C 24141950 SLC22A23 166416 1048 chr6 3627568 3629835 3628918 N NA NA SLC22A23,BPHL,PXDC1 IMR90 Hi-C 24141950 SLC22A23 170775 1049 chr6 37483259 37485317 37484494 Y NA CCDC167 CCDC167,MDGA1,RNF8,FTSJD2,TBC1D22B,MIR4462,ZFAND3 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 CCDC167 15559 1050 chr6 41286285 41287998 41286991 N NA NCR2 C6orf130 K562 ChIA-PET 22265404 NCR2 15530 1051 chr6 41382496 41385159 41384074 N NA NA FOXP4,MDFI,TFEB IMR90,H1ESC,HELA,K562 Hi-C,5C 24141950,22955621 NCR2 78968 1052 chr6 41592721 41593727 41593349 N NA MDFI NCR2,FOXP4,MDFI,TFEB,PGC IMR90 Hi-C 24141950 MDFI 12468 1053 chr6 42515150 42516109 42515562 N NA UBR2 TRERF1,GUCA1A,TAF8,GUCA1B,CCND3,C6orf132,MRPS10,UBR2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 UBR2 15651 1054 chr6 42738336 42741396 42738998 Y CUL9,TRERF1,UBR2,TBCC,CNPY3,C6orf226 TBCC,KIAA0240 KIAA0240,GUCA1A,UBR2,ATP6V0CP3,PRPH2,RPL7L1,TBCC,C6orf226,TRERF1,PTCRA,PPP2R5D,KLHDC3,MEA1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 TBCC 24452 1055 chr6 42748736 42757718 42750894 N NA TBCC,KIAA0240 KIAA0240,UBR2,RPL7L1,PTCRA,KLHDC3,MEA1,PPP2R5D,PRPH2,TBCC,ATP6V0CP3,C6orf226 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 KIAA0240 31076 1056 chr6 42878768 42879914 42879267 N NA RPL7L1,CNPY3,GNMT NA NA NA NA CNPY3 16946 1057 chr6 44040143 44042171 44041156 N NA NA POLH,GTPBP2,LOC100132354,RSPH9,MAD2L1BP,VEGFA,MRPS18A,HSP90AB1,XPO5,C6orf223,CAPN11,TMEM63B IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 MRPL14 53020 1058 chr6 4405075 4406774 4405919 N NA NA CDYL,RPP40 IMR90 Hi-C 24141950 ECI2 269244 1059 chr6 52160505 52163176 52161695 N NA MCM3 TMEM14A,PAQR8 IMR90 Hi-C 24141950 MCM3 10923 1060 chr6 53220761 53227895 53224341,53227118 Y,N NA;NA ELOVL5 ELOVL5 K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 ELOVL5 6784 1061 chr6 53411957 53413768 53412914 Y GCLC GCLC NA NA NA NA GCLC 2030 1062 chr6 53596418 53600525 53599868 N NA NA GCLC,ICK,KLHL31,LRRC1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LRRC1 59253 1063 chr6 5828345 5830005 5829440 N NA NA LY86-AS1 IMR90 Hi-C 24141950 NRN1 177628 1064 chr6 5831501 5833588 5831761 N NA NA LY86-AS1 IMR90 Hi-C 24141950 NRN1 174045 1065 chr6 64344705 64347210 64346270 N NA PHF3 PHF3,EYS,PTP4A1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 PHF3 9221 1066 chr6 6689940 6701807 6700444 N NA NA RREB1,SSR1,SNRNP48 IMR90 Hi-C 24141950 RREB1 406023 1067 chr6 7051593 7053321 7052452 N NA NA RREB1 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 RREB1 54509 1068 chr6 80487572 80488250 80487870 Y NA NA NA NA NA NA ELOVL4 169065 1069 chr6 80671799 80676561 80674514 N NA ELOVL4,TTK NA NA NA NA ELOVL4 14484 1070 chr6 89781499 89784189 89782913 N NA PNRC1 NA NA NA NA PNRC1 6240 1071 chr6 91180820 91184801 91182660,91181917 N,N NA;NA NA BACH2,GJA10,CASP8AP2,MDN1 IMR90 Hi-C 24141950 MAP3K7 112106 1072 chr6 91320322 91321385 91320934 Y MAP3K7,MAP3K7 MAP3K7 NA NA NA NA MAP3K7 23415 1073 chr6 99271374 99273474 99272100 N NA POU3F2 NA NA NA NA POU3F2 9106 1074 chr6 99274606 99277686 99276146 N NA POU3F2 NA NA NA NA POU3F2 4894 1075 chr7 101379273 101380157 101379598 N NA NA CUX1,EMID2,SH2B2 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 CUX1 79027 1076 chr7 101382479 101394526 101384407,101386905 Y,N NA;NA NA CUX1,EMID2,SH2B2 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 CUX1 64658 1077 chr7 104579022 104586133 104582024,104584044,104585670 N,N,Y NA;NA;MLL5 LOC723809,LOC100216546 MLL5,LOC100216545,LHFPL3,SRPK2,LOC723809,LOC100216546 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 LOC723809 11930 1078 chr7 109390605 109393398 109391913 N NA NA NA NA NA NA DNAJB9 1180416 1079 chr7 115784748 115786693 115785534 N NA NA MET IMR90 Hi-C 24141950 CAPZA2 715870 1080 chr7 1208874 1211238 1209668 N NA C7orf50,ZFAND2A ZFAND2A,C7orf50,CYP2W1 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 ZFAND2A 9019 1081 chr7 124883946 124886394 124885418 N NA NA NA NA NA NA POT1 313909 1082 chr7 128572481 128574169 128573374 Y NA NA IRF5 MCF7 ChIA-PET 22265404 LOC100130705 66017 1083 chr7 129193978 129194616 129194247 N NA NA FAM40B,AHCYL2,LOC100287482,NRF1,SMO IMR90 Hi-C 24141950 NRF1 56939 1084 chr7 129418954 129421428 129419867 N NA NA UBE2H,NRF1 MCF7 ChIA-PET 22265404 NRF1 167399 1085 chr7 135664441 135667755 135665612,135666819 Y,N NA;NA MTPN NA NA NA NA MTPN 2237 1086 chr7 139929049 139932175 139930538 Y TBXAS1,JHDM1D NA JHDM1D,LOC100134229,SLC37A3 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC100134229 51988 1087 chr7 140770679 140771717 140771260 N NA NA NA NA NA NA MRPS33 55898 1088 chr7 142167821 142168597 142168270 N NA NA NA NA NA NA MTRNR2L6 205534 1089 chr7 142170814 142173315 142172166 N NA NA NA NA NA NA MTRNR2L6 200816 1090 chr7 142190055 142192567 142191047 N NA NA NA NA NA NA MTRNR2L6 181564 1091 chr7 142205976 142207233 142206511 N NA NA NA NA NA NA MTRNR2L6 166898 1092 chr7 142241322 142248578 142247343,142242240 N,N NA;NA NA EPHB6 IMR90 Hi-C 24141950 MTRNR2L6 125553 1093 chr7 142272102 142274260 142273378 N NA NA NA NA NA NA MTRNR2L6 99871 1094 chr7 142418601 142420895 142419803 N NA MTRNR2L6 TRY6 IMR90 Hi-C 24141950 MTRNR2L6 44470 1095 chr7 142423505 142431618 142425323,142429237 N,N NA;NA MTRNR2L6 TRY6 IMR90 Hi-C 24141950 MTRNR2L6 49374 1096 chr7 148064 151215 149154 N NA NA FAM20C IMR90 Hi-C 24141950 PDGFA 408266 1097 chr7 148637083 148639234 148638126 N NA NA EZH2,CUL1,ZNF786,ZNF398,ZNF425 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 EZH2 55642 1098 chr7 150058377 150062548 150060970 N NA LRRC61,REPIN1,ZNF775,LOC728743 RARRES2,LOC728743,ZNF775 IMR90 Hi-C 24141950 REPIN1 3331 1099 chr7 150359659 150367455 150361144,150365701 N,Y NA;ACTR3C,GIMAP8,GIMAP7,GIMAP4,GIMAP6,LOC100128542,GIMAP5,GIMAP2,GIMAP1 GIMAP6,GIMAP2,GIMAP1-GIMAP5 NA NA NA NA GIMAP2 15339 1100 chr7 154995844 154999568 154997179 N NA NA INSIG1,LOC202781,PAXIP1 K562 ChIA-PET 22265404 INSIG1 89918 1101 chr7 155075057 155076416 155075746 N NA INSIG1 INSIG1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 INSIG1 13070 1102 chr7 155156470 155157803 155157032 N NA NA PAXIP1,LOC100132707,HTR5A,CNPY1,INSIG1 IMR90 Hi-C 24141950 INSIG1 66984 1103 chr7 157092419 157096566 157095326,157092713 N,Y NA;DNAJB6,DNAJB6 DNAJB6 UBE3C,DNAJB6 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 DNAJB6 33145 1104 chr7 158989651 158990663 158989969 N NA NA VIPR2 IMR90 Hi-C 24141950 VIPR2 52002 1105 chr7 17273009 17274358 17273863 Y AHR NA AHR IMR90 Hi-C 24141950 BZW2 587250 1106 chr7 20836872 20838719 20837656 Y SP8 NA SP8 K562 ChIA-PET 22265404 SP4 628970 1107 chr7 25895610 25898338 25896733 Y NA NA HOXA9,HOXA10-HOXA9,SKAP2,NFE2L3,HNRNPA2B1,CBX3,HOTAIRM1,HOXA3,HOXA2,HOXA1,HOXA5,HOXA6,HOXA7,HOXA4,HOXA-AS3,EVX1,HOXA11,HOXA-AS5,SNX10 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 NFE2L3 293509 1108 chr7 25901008 25902930 25901872 Y NA NA HOXA9,HOXA10-HOXA9,SKAP2,NFE2L3,HNRNPA2B1,CBX3,HOTAIRM1,HOXA3,HOXA2,HOXA1,HOXA5,HOXA6,HOXA7,HOXA4,HOXA-AS3,EVX1,HOXA11,HOXA-AS5,SNX10 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 NFE2L3 288917 1109 chr7 25933448 25934393 25934013 N NA NA HOXA9,HOXA10-HOXA9,HOXA11,HOXA-AS5,SNX10,HOXA5,HOXA-AS3,HOXA7,HOXA6,LOC441204,MIR196B,HOTTIP,HOXA13,NFE2L3,HNRNPA2B1,CBX3,HOXA2,HOXA1,HOXA3,HOTAIRM1 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 NFE2L3 257454 1110 chr7 26437538 26439017 26438281 N NA NA LOC441204 MCF7,K562 ChIA-PET 22265404 SNX10 106023 1111 chr7 27274206 27276373 27275278 N NA HOXA-AS5 NA NA NA NA HOXA-AS5 49179 1112 chr7 29195625 29198568 29196733 N NA CPVL,CHN2 NA NA NA NA CPVL 9472 1113 chr7 38338948 38342196 38339676 N NA LOC100506776 NA NA NA NA LOC100506776 38982 1114 chr7 38368346 38371964 38370700 N NA LOC100506776 NA NA NA NA LOC100506776 9214 1115 chr7 38373113 38376852 38374876 N NA LOC100506776 LOC100506776 K562 ChIA-PET 22265404 LOC100506776 4326 1116 chr7 399619 401169 400304 N NA NA NA NA NA NA PDGFA 158312 1117 chr7 45033572 45035538 45034819 N NA MYO1G,SNHG15,CCM2 SNHG15 MCF7 ChIA-PET 22265404 CCM2 3807 1118 chr7 4680695 4682989 4681697 N NA FOXK1 SDK1,FOXK1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 FOXK1 38941 1119 chr7 50252155 50253549 50253141 Y NA NA NA NA NA NA IKZF1 90829 1120 chr7 50301240 50302911 50302303 N NA IKZF1 NA NA NA NA IKZF1 41467 1121 chr7 50304364 50308503 50306670 Y IKZF1,FIGNL1 IKZF1 NA NA NA NA IKZF1 35875 1122 chr7 5592640 5597505 5595947 Y CCZ1,ACTB FBXL18,ACTB RNF216,FBXL18,TNRC18 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ACTB 22408 1123 chr7 55953292 55956113 55955258 N NA ZNF713 NA NA NA NA ZNF713 24218 1124 chr7 5609019 5610973 5609572 Y SLC29A4,TNRC18,FBXL18,FSCN1 ACTB RNF216,FSCN1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ACTB 38787 1125 chr7 6120246 6121785 6121205 N NA EIF2AK1,USP42 EIF2AK1,USP42 K562,MCF7 ChIA-PET 22265404 EIF2AK1 21386 1126 chr7 64464014 64467469 64467154 N NA ZNF117,CCT6P3 ZNF117,CCT6P3 MCF7 ChIA-PET 22265404 ZNF117 12600 1127 chr7 64733955 64735113 64734481 N NA NA NA NA NA NA ZNF92 103655 1128 chr7 65957308 65960075 65958626 N NA NA LINC00174,TPST1 IMR90 Hi-C 24141950 LOC493754 83423 1129 chr7 66056171 66057832 66057332 N NA LOC493754 KCTD7 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC493754 12673 1130 chr7 66145828 66148291 66147001 N NA NA KCTD7,LOC493754,RABGEF1 IMR90 Hi-C 24141950 RABGEF1 57352 1131 chr7 6768926 6771131 6769407 N NA ZNF12,PMS2CL ZNF12 K562 ChIA-PET 22265404 PMS2CL 3805 1132 chr7 7195778 7198222 7196974 N NA C1GALT1 COL28A1 IMR90 Hi-C 24141950 C1GALT1 24024 1133 chr7 74063858 74064753 74064515 Y GTF2IRD2B,LAT2 GTF2I NA NA NA NA GTF2I 7277 1134 chr7 75993272 75994303 75993896 Y NA YWHAG,ZP3 YWHAG MCF7 ChIA-PET 22265404 YWHAG 4930 1135 chr7 7983804 7985593 7984425 Y GLCCI1 GLCCI1 RPA3,LOC729852 IMR90 Hi-C 24141950 GLCCI1 22781 1136 chr7 92480327 92485422 92481387 N NA CDK6 CDK6 K562 ChIA-PET 22265404 CDK6 14386 1137 chr7 92591131 92596615 92591737 N NA NA CDK6,FAM133B IMR90 Hi-C 24141950 CDK6 125190 1138 chr8 102120082 102122736 102121490 Y PABPC1,YWHAZ,YWHAZ,ZNF706,ZNF706 NA YWHAZ,FLJ42969,ZNF706 MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 ZNF706 95224 1139 chr8 102166596 102169544 102168303 Y NA ZNF706 FLJ42969,YWHAZ,ZNF706 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF706 48416 1140 chr8 103540640 103541577 103541182 N NA NA UBR5,ODF1 IMR90 Hi-C 24141950 UBR5 115723 1141 chr8 103595629 103595990 103595680 N NA NA UBR5,KLF10 K562,MCF7 ChIA-PET 22265404 KLF10 71993 1142 chr8 103898798 103900109 103899378 N NA AZIN1 AZIN1,ATP6V1C1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 AZIN1 22401 1143 chr8 103909669 103913882 103910842 Y NA AZIN1 ATP6V1C1,AZIN1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 AZIN1 33272 1144 chr8 105287455 105292510 105291004 Y LRP12 NA RIMS2 IMR90 Hi-C 24141950 LRP12 308742 1145 chr8 105635371 105636053 105635907 N NA LRP12 LRP12 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 LRP12 34119 1146 chr8 105677732 105678995 105678041 Y TM7SF4,LRP12 NA LRP12 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 LRP12 76480 1147 chr8 105879015 105881635 105880362 N NA NA ZFPM2 IMR90 Hi-C 24141950 LRP12 277763 1148 chr8 11734728 11735922 11735438 Y CTSB CTSB CTSB,BLK,FDFT1,FAM167A IMR90 Hi-C 24141950 CTSB 9082 1149 chr8 125202376 125203802 125203153 N NA NA TMEM65,FAM91A1,FER1L6,FER1L6-AS1 IMR90 Hi-C 24141950 TMEM65 181138 1150 chr8 125208067 125213034 125210261,125208271,125212422 Y,N,Y FAM91A1,TMEM65,RNF139;NA;NA NA TMEM65,FAM91A1,FER1L6,FER1L6-AS1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 TMEM65 171906 1151 chr8 125256916 125258650 125257531 N NA NA TMEM65,FER1L6,FER1L6-AS1,FAM91A1 IMR90 Hi-C 24141950 TMEM65 126290 1152 chr8 128208505 128209945 128209227 Y NA NA LOC727677,MYC IMR90 Hi-C 24141950 MYC 538370 1153 chr8 129839659 129841474 129840699 N NA NA MYC,PVT1 IMR90 Hi-C 24141950 LOC728724 412012 1154 chr8 130068809 130075521 130071662,130074279 N,N NA;NA NA NA NA NA NA LOC728724 177965 1155 chr8 130171887 130187017 130185744,130178657 N,Y NA;NA NA NA NA NA NA LOC728724 66469 1156 chr8 130189176 130194888 130192076 N NA NA NA NA NA NA LOC728724 58598 1157 chr8 130268956 130272776 130270870 N NA LOC728724 NA NA NA NA LOC728724 15470 1158 chr8 130381872 130393166 130382958,130390098,130392194,130387510 N,N,N,N NA;NA;NA;NA NA NA NA NA NA LOC728724 128386 1159 chr8 130396773 130401883 130398810,130400787 N,N NA;NA NA NA NA NA NA LOC728724 143287 1160 chr8 130424554 130430199 130425977,130428030 N,N NA;NA NA NA NA NA NA LOC728724 171068 1161 chr8 130433320 130437395 130435948 N NA NA NA NA NA NA LOC728724 179834 1162 chr8 130547122 130549476 130548270 Y NA NA PVT1,MYC IMR90 Hi-C 24141950 LOC728724 293636 1163 chr8 130566046 130568128 130566877 Y FAM49B NA NA NA NA NA LOC728724 312560 1164 chr8 135055731 135056817 135056062 N NA NA ST3GAL1,ZFAT IMR90 Hi-C 24141950 ST3GAL1 471548 1165 chr8 135843401 135846191 135844651 N NA NA ZFAT,MIR30D,MIR30B IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 ZFAT 118109 1166 chr8 141473447 141475882 141474982 Y NA TRAPPC9,CHRAC1 TRAPPC9,EIF2C2,CHRAC1 K562,MCF7 ChIA-PET 22265404 TRAPPC9 4769 1167 chr8 143156431 143158226 143157243 N NA NA TSNARE1 IMR90 Hi-C 24141950 LINC00051 121491 1168 chr8 143533983 143535698 143534644 N NA TSNARE1 BAI1,TSNARE1 MCF7 ChIA-PET 22265404 TSNARE1 49440 1169 chr8 144255042 144256501 144255860 N NA NA NA NA NA NA ZFP41 72608 1170 chr8 144259072 144261570 144260809 N NA NA NA NA NA NA ZFP41 67539 1171 chr8 144424949 144428286 144427558 N NA TOP1MT,C8orf51,RHPN1 NA NA NA NA TOP1MT 7899 1172 chr8 1703156 1704555 1703851 N NA CLN8 NA NA NA NA CLN8 7315 1173 chr8 1706550 1709229 1708702 N NA CLN8 NA NA NA NA CLN8 2641 1174 chr8 20132687 20136597 20136093 N NA LZTS1 DOK2,XPO7 IMR90 Hi-C 24141950 LZTS1 19884 1175 chr8 20161025 20162509 20161536 N NA LZTS1 ATP6V1B2,LZTS1 IMR90 Hi-C 24141950 LZTS1 48222 1176 chr8 2140770 2144693 2142295 N NA NA NA NA NA NA KBTBD11 218726 1177 chr8 2162375 2163418 2162872 N NA NA NA NA NA NA KBTBD11 240331 1178 chr8 2211405 2212911 2212375 N NA NA NA NA NA NA KBTBD11 289361 1179 chr8 2590478 2592706 2591322 Y NA NA NA NA NA NA KBTBD11 668434 1180 chr8 28257928 28261240 28258865,28260288 Y,N HMBOX1,HMBOX1;NA ZNF395 ZNF395,FBXO16 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ZNF395 13951 1181 chr8 28478984 28480746 28480105 N NA NA EXTL3,INTS9 IMR90 Hi-C 24141950 EXTL3 78407 1182 chr8 29386143 29388110 29387089 N NA NA C8orf75,DUSP4,LOC286135 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 KIF13B 265533 1183 chr8 30826055 30828757 30827055 N NA NA PURG,WRN IMR90 Hi-C 24141950 WRN 62021 1184 chr8 33489487 33491262 33490548 N NA NA NA NA NA NA RNF122 64844 1185 chr8 41997060 41998606 41998084 Y NA AP3M2 KAT6A,ANK1,POLB,AP3M2,VDAC3 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 AP3M2 11858 1186 chr8 49426908 49427578 49427160 Y SNAI2 NA SNAI2 IMR90 Hi-C 24141950 UBE2V2 505913 1187 chr8 52873983 52875620 52874970 N NA NA NA NA NA NA PCMTD1 62248 1188 chr8 59634510 59635150 59634909 N NA NA NA NA NA NA NSMAF 62106 1189 chr8 60058662 60061572 60060534 N NA TOX NA NA NA NA TOX 26895 1190 chr8 60097736 60102607 60100756 N NA NA NA NA NA NA TOX 65969 1191 chr8 60212852 60215044 60213655 N NA NA TOX IMR90 Hi-C 24141950 TOX 181085 1192 chr8 61563828 61565869 61564966 N NA CHD7 CHD7,RAB2A MCF7,K562,IMR90 ChIA-PET,Hi-C 22265404,24141950 CHD7 25455 1193 chr8 66853688 66859094 66858546 N NA NA NA NA NA NA PDE7A 99719 1194 chr8 66862258 66866229 66863570 Y PDE7A NA PDE7A MCF7 ChIA-PET 22265404 PDE7A 108289 1195 chr8 74805058 74807417 74805434 N NA UBE2W UBE2W IMR90 Hi-C 24141950 UBE2W 13948 1196 chr8 81209215 81210122 81209773 N NA NA NA NA NA NA TPD52 125379 1197 chr8 82060320 82060879 82060854 N NA PAG1 PAG1 IMR90 Hi-C 24141950 PAG1 36017 1198 chr8 95002360 95004754 95003783 Y NA NA LINC00535,RBM12B,RAD54B,CDH17,GEM IMR90 Hi-C 24141950 PDP1 73277 1199 chr9 100565604 100567591 100566122 Y CORO2A,FOXE1 NA FOXE1,C9orf156 IMR90 Hi-C 24141950 XPA 105913 1200 chr9 100731525 100733737 100732540 N NA C9orf156,ANP32B HEMGN,C9orf156,ANP32B IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 ANP32B 11752 1201 chr9 102014950 102016865 102016156 Y NA ALG2,SEC61B NA NA NA NA SEC61B 30380 1202 chr9 103188766 103190892 103189448 N NA C9orf30-TMEFF1 C9orf30-TMEFF1,NR4A3 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 C9orf30-TMEFF1 13296 1203 chr9 107730324 107732297 107730673 Y SLC44A1,FSD1L,FSD1L,ABCA1 NA ABCA1 IMR90 Hi-C 24141950 NIPSNAP3A 220355 1204 chr9 107751923 107756903 107753558,107755877 N,Y NA;ABCA1 NA ABCA1,SLC44A1 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 NIPSNAP3A 241954 1205 chr9 108649616 108650903 108650178 N NA NA NA NA NA NA TMEM38B 192791 1206 chr9 123835914 123845535 123837210 N NA CNTRL CNTRL,TRAF1,MEGF9,FBXW2,C5,RAB14 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 CNTRL 5039 1207 chr9 126064398 126065896 126065270 N NA STRBP RABGAP1,STRBP,MIR600HG IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 STRBP 33543 1208 chr9 126066565 126067896 126067208 N NA STRBP STRBP,MIR600HG,RABGAP1 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 STRBP 35710 1209 chr9 126084403 126085682 126085270 N NA NA STRBP IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 STRBP 53548 1210 chr9 126101092 126103203 126102127 N NA NA RC3H2,RABGAP1,MIR600HG,STRBP,CRB2,DENND1A IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 STRBP 70237 1211 chr9 128169782 128171199 128170403 N NA NA PBX3 MCF7 ChIA-PET 22265404 GAPVD1 145671 1212 chr9 129483806 129486964 129485370 N NA NA NA NA NA NA ZBTB43 80321 1213 chr9 130006645 130008945 130007485 N NA GARNL3 NA NA NA NA GARNL3 17811 1214 chr9 130370274 130371232 130370841 N NA STXBP1 AK1,STXBP1,FAM129B IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 STXBP1 3254 1215 chr9 130769555 130770860 130770250 Y SLC25A25,NAIF1,DPM2,FAM102A FAM102A FAM102A,SLC25A25,NAIF1 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 FAM102A 26743 1216 chr9 130788137 130789854 130788725 Y CDK9,SLC25A25,NAIF1,DPM2,FAM102A FAM102A,NAIF1,SLC25A25 SLC25A25,NAIF1,FAM102A IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 NAIF1 39745 1217 chr9 131970551 131971341 131970966 N NA IER5L PPP2R4,CRAT,ASB6,METTL11A,LOC100506190,IER5L,C9orf50 IMR90,MCF7 Hi-C,ChIA-PET 24141950,22265404 IER5L 30011 1218 chr9 132174775 132178158 132176075 Y NA NA C9orf106,LOC100506190,C9orf50,PPP2R4,IER5L IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 LOC100506190 72781 1219 chr9 132220503 132224318 132222734 N NA LOC100506190 PPP2R4,CRAT,ASB6,METTL11A,IER5L,C9orf106,C9orf50,LOC100506190 IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 LOC100506190 26621 1220 chr9 133411227 133412592 133411605 N NA LOC100272217,FUBP3 ASS1,FUBP3,GPR107,LOC100272217,PRDM12 IMR90,K562 Hi-C,ChIA-PET 24141950,22265404 LOC100272217 42289 1221 chr9 134247688 134249300 134248889 Y AIF1L,POMT1,PRRC2B NA PRRC2B,NUP214,FAM78A IMR90 Hi-C 24141950 PRRC2B 56177 1222 chr9 134268402 134274700 134273830,134269808 N,N NA;NA PRRC2B PRRC2B,NUP214,FAM78A,PPAPDC3 IMR90 Hi-C 24141950 PRRC2B 30777 1223 chr9 19229415 19232890 19230748 N NA NA DENND4C,PLIN2 IMR90 Hi-C 24141950 DENND4C 57859 1224 chr9 20639805 20641532 20640671 N NA MLLT3,KIAA1797 KIAA1797,IFNB1 IMR90 Hi-C 24141950 KIAA1797 16777 1225 chr9 21081473 21083277 21081951 N NA NA NA NA NA NA KIAA1797 423164 1226 chr9 2241474 2242858 2242050 Y NA NA FLJ35024,VLDLR,KIAA0020 IMR90 Hi-C 24141950 SMARCA2 226132 1227 chr9 2291266 2294117 2292204 N NA NA NA NA NA NA SMARCA2 275924 1228 chr9 36485691 36489158 36487823 N NA NA RNF38 IMR90 Hi-C 24141950 MELK 83701 1229 chr9 45441220 45442490 45441902 N NA NA NA NA NA NA FAM201A 6820135 1230 chr9 6679966 6692799 6681639 Y UHRF2,KDM4C NA KDM4C,UHRF2,GLDC K562,MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 KDM4C 64842 1231 chr9 6702712 6705342 6704219 N NA NA KDM4C MCF7 ChIA-PET 22265404 KDM4C 52299 1232 chr9 6715364 6717407 6716287 N NA KDM4C KDM4C MCF7 ChIA-PET 22265404 KDM4C 40234 1233 chr9 73033331 73036025 73034825 Y SMC5,KLF9 NA TRPM3,SMC5,LOC100507299,KLF9 MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 SMC5 159453 1234 chr9 75746830 75748124 75747448 Y ANXA1 ANXA1 ANXA1 IMR90 Hi-C 24141950 ANXA1 18657 1235 chr9 76859270 76862208 76860973 N NA NA NA NA NA NA RORB 250044 1236 chr9 76889595 76894383 76892680,76892535 N,N NA;NA NA NA NA NA NA RORB 217869 1237 chr9 76896159 76898781 76897788 N NA NA NA NA NA NA RORB 213471 1238 chr9 7878409 7880669 7879887 N NA NA NA NA NA NA C9orf123 78610 1239 chr9 7972999 7978266 7976551,7974613 Y,N NA;NA NA NA NA NA NA C9orf123 173200 1240 chr9 80732731 80735363 80734086 N NA NA NA NA NA NA GNAQ 86512 1241 chr9 83727747 83729494 83728549 N NA NA NA NA NA NA TLE1 574102 1242 chr9 90937466 90938556 90937999 N NA NA NXNL2,DAPK1,SPIN1 IMR90 Hi-C 24141950 SPIN1 64741 1243 chr9 91146924 91147723 91147438 Y NXNL2 NA NA NA NA NA SPIN1 143627 1244 chr9 91535632 91539560 91537131,91538672 N,Y NA;SECISBP2,S1PR3,C9orf47 NA LOC286238,S1PR3,SHC3 IMR90 Hi-C 24141950 S1PR3 66802 1245 chr9 92099834 92106316 92105108 N NA SEMA4D SEMA4D IMR90 Hi-C 24141950 SEMA4D 5223 1246 chr9 92136992 92138697 92137444 Y SECISBP2 SEMA4D SEMA4D,SECISBP2 IMR90 Hi-C 24141950 SEMA4D 42381 1247 chr9 92150464 92152655 92151370 N NA NA SECISBP2,SEMA4D IMR90 Hi-C 24141950 SEMA4D 55853 1248 chr9 93736154 93740676 93737427 Y NA NA ROR2,LOC100129316,AUH,MIR3910-2,MIR3910-1 IMR90 Hi-C 24141950 SYK 172142 1249 chr9 93798013 93800785 93799603 N NA NA NFIL3 MCF7 ChIA-PET 22265404 SYK 234001 1250 chr9 93911956 93914698 93913446 Y SYK,SYK,NFIL3 NA LOC100129316,AUH,NFIL3,ROR2 IMR90 Hi-C 24141950 AUH 209508 1251 chr9 93916601 93919694 93918816 N NA NA AUH,LOC100129316,ROR2 IMR90 Hi-C 24141950 AUH 204512 1252 chr9 93921890 93927875 93925927 N NA NA AUH,LOC100129316,NFIL3 IMR90 Hi-C 24141950 AUH 196331 1253 chr9 93939269 93941136 93940204 N NA NA AUH,LOC100129316,NFIL3 IMR90 Hi-C 24141950 AUH 183070 1254 chr9 95906176 95907051 95906503 N NA C9orf89,NINJ1 NINJ1,C9orf89 K562,IMR90,MCF7 ChIA-PET,Hi-C 22265404,24141950 NINJ1 9606 1255 chrM 2308 16569 16566 N NA NA NA NA NA NA NA -1 1256 chrX 112968260 112971650 112970073 N NA NA NA NA NA NA ALG13 2043914 1257 chrX 119619100 119620478 119619907 N NA LAMP2 LAMP2 K562 ChIA-PET 22265404 LAMP2 15896 1258 chrX 122898708 122899678 122899013 Y NA THOC2 NA NA NA NA THOC2 31804 1259 chrX 123350096 123353650 123352167 N NA NA NA NA NA NA SH2D1A 126482 1260 chrX 129085398 129088300 129086839 N NA UTP14A UTP14A K562 ChIA-PET 22265404 UTP14A 45301 1261 chrX 129094850 129096048 129095384 N NA BCORL1 UTP14A K562 ChIA-PET 22265404 BCORL1 43116 1262 chrX 129115125 129118196 129116523 N NA BCORL1 BCORL1,UTP14A IMR90,K562,MCF7 Hi-C,ChIA-PET 24141950,22265404 BCORL1 20968 1263 chrX 12967307 12969974 12968986 N NA TMSB4X NA NA NA NA TMSB4X 23252 1264 chrX 12971998 12976671 12973853 Y ATXN3L,TLR7,TLR8 TMSB4X NA NA NA NA TMSB4X 16555 1265 chrX 13016249 13019337 13017779 Y TLR7,TMSB4X TMSB4X NA NA NA NA TMSB4X 23023 1266 chrX 13102123 13111507 13109340,13105193,13110880 Y,N,Y TLR8,TMSB4X;NA;TLR7,TLR8,TMSB4X NA TMSB4X,FAM9C MCF7,IMR90 ChIA-PET,Hi-C 22265404,24141950 TMSB4X 108897 1267 chrX 13195541 13197022 13196237 N NA NA NA NA NA NA TMSB4X 202315 1268 chrX 135667810 135670137 135668682 Y GPR101,ARHGEF6,CD40LG NA ARHGEF6 IMR90 Hi-C 24141950 CD40LG 60199 1269 chrX 135705000 135707219 135705932 N NA CD40LG NA NA NA NA CD40LG 23117 1270 chrX 135991016 135992938 135991863 N NA RBMX RBMX K562,MCF7 ChIA-PET 22265404 RBMX 28077 1271 chrX 139013810 139016262 139015254 N NA NA MIR505,ATP11C MCF7 ChIA-PET 22265404 ATP11C 99363 1272 chrX 147390552 147393802 147392710 N NA NA NA NA NA NA AFF2 188337 1273 chrX 147461370 147463514 147462872 N NA NA NA NA NA NA AFF2 118625 1274 chrX 152200364 152201259 152200946 N NA PNMA3 PNMA5 IMR90 Hi-C 24141950 PNMA3 23507 1275 chrX 16900305 16901330 16900944 Y TXLNG RBBP7 RBBP7,TXLNG MCF7,IMR90,K562 ChIA-PET,Hi-C 22265404,24141950 RBBP7 11771 1276 chrX 18692673 18696291 18693191 Y PHKA2,CDKL5 NA NA NA NA NA PHKA2 306189 1277 chrX 39547903 39549047 39548146 N NA NA NA NA NA NA BCOR 487535 1278 chrX 39712899 39715740 39714603 Y BCOR NA BCOR IMR90 Hi-C 24141950 BCOR 320842 1279 chrX 39729122 39730930 39729579 Y BCOR NA NA NA NA NA BCOR 305652 1280 chrX 39795582 39798287 39795683,39796863 N,N NA;NA NA BCOR IMR90 Hi-C 24141950 BCOR 238295 1281 chrX 39867174 39875071 39873316 N NA NA BCOR MCF7,K562 ChIA-PET 22265404 BCOR 161511 1282 chrX 40397933 40399276 40398890 N NA ATP6AP2 NA NA NA NA ATP6AP2 40940 1283 chrX 42800827 42804497 42803589 N NA NA NA NA NA NA CASK 1018540 1284 chrX 45709438 45711592 45711169 N NA NA NA NA NA NA ZNF673 595032 1285 chrX 46038134 46041186 46039813 N NA NA NA NA NA NA ZNF673 265438 1286 chrX 4627574 4630253 4628795 Y NA NA NA NA NA NA PRKX 995899 1287 chrX 47225094 47226426 47225751 N NA NA NA NA NA NA ZNF41 115919 1288 chrX 48533619 48536362 48534862 N NA WAS,SUV39H1 NA NA NA NA WAS 5824 1289 chrX 48594647 48596931 48595869 N NA SUV39H1 SUV39H1 IMR90,MCF7,K562 Hi-C,ChIA-PET 24141950,22265404 SUV39H1 39516 1290 chrX 51138737 51139764 51139187 N NA NA NA NA NA NA GSPT2 346717 1291 chrX 53740191 53743711 53741907 Y KDM5C,SMC1A,HUWE1,PHF8 HUWE1 HUWE1 MCF7 ChIA-PET 22265404 HUWE1 26518 1292 chrX 54664493 54667424 54665836 Y NA NA ITIH6,MAGED2 MCF7 ChIA-PET 22265404 GNL3L 107849 1293 chrX 55933501 55935809 55935111 N NA NA NA NA NA NA RRAGB 189391 1294 chrX 63799585 63800727 63800070 N NA NA NA NA NA NA FAM123B 373961 1295 chrX 64815705 64817386 64816377 Y NA NA MSN IMR90 Hi-C 24141950 LAS1L 61019 1296 chrX 78393541 78396473 78395283 N NA NA NA NA NA NA ITM2A 226576 1297 chrX 78397443 78407419 78400131,78402418 N,Y NA;P2RY10,GPR174 NA NA NA NA NA ITM2A 215630 1298 chrX 78512447 78518591 78514694,78518518 Y,N P2RY10,GPR174;NA NA NA NA NA NA ITM2A 104458 1299 chrX 78541700 78545483 78544324 N NA NA NA NA NA NA ITM2A 77566 1300 chrX 97121849 97123642 97122429 N NA NA NA NA NA NA CSTF2 2951706 1301 chrY 21710403 21712527 21712060 N NA BCORP1,TXLNG2P NA NA NA NA TXLNG2P 16717 1302 chrY 21978011 21978683 21978172 N NA NA NA NA NA NA KDM5D 71186 1303 chrY 2870929 2871997 2871030 N NA NA NA NA NA NA ZFY 67817