Software

A distribution-free and analytic method for power and sample size calculation in single-cell differential expression
A distribution-free and analytic method for power and sample size calculation in single-cell differential expression

power and sample size estimation for single-cell transcriptome

Sep 4, 2024
aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph

adaptive k nearest neighbor graph for single-cell and spatial clustering

Aug 2, 2024
scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data
scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data

normalization for single-cell transcriptome

Jan 19, 2024
Scalable and model-free detection of spatial patterns and colocalization
Scalable and model-free detection of spatial patterns and colocalization

spatial pattern and co-localization

Oct 13, 2022
Dysregulated ligand-receptor interactions from single-cell transcriptomics
Dysregulated ligand-receptor interactions from single-cell transcriptomics

dysregulated ligand-receptor interaction for single-cell data

Apr 29, 2022
scMRMA: single cell multiresolution marker-based annotation
scMRMA: single cell multiresolution marker-based annotation

cell identities prediction for single-cell data

Oct 15, 2021
scRNABatchQC: multi-samples quality control for single cell RNA-seq data
scRNABatchQC: multi-samples quality control for single cell RNA-seq data

batch quality control for single-cell transcriptome

Aug 3, 2019