beRBP: Binding Estimation for human RNA-Binding Proteins

beRBP is an approach to predict RBP-RNA interaction given a PWM of a RBP and one RNA sequence.

1. RNA sequence(s)

If you have only ONE RNA sequence, please paste it below in fasta format: Example


Or, if you have MULTIPLE RNA sequences, please upload them in a file in fasta format: Example

2. RBP:PWM(s) Model

      Specific model

      General model


Select RBP:PWM(s) by click here.


RBPMotif
A1CF
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A2BP1
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ACO1
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ANKHD1
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ANKRD17
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BRUNOL4
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BRUNOL5
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BRUNOL6
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CELF3
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CIRBP
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CNOT4
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CPEB2
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CPEB3
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CPEB4
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CSDA
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DAZAP1
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EIF2S1
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EIF4B
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ELAVL1
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ELAVL2
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ELAVL3
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ENOX1
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ENOX2
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ESRP1
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ESRP2
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FMR1
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FUS
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Fusip1
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FXR1
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FXR2
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G3BP2
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HNRNPA1
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HNRNPA1L2
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HNRNPA2B1
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HNRNPA3
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HNRNPC
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HNRNPCL1
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HNRNPF
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HNRNPH1
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HNRNPH2
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hnRNPK
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HNRNPL
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hnRNPLL
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HNRNPR
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HNRPDL
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IGF2BP1
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IGF2BP2
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IGF2BP3
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KHDRBS1
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KHDRBS2
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KHDRBS3
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LIN28A
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LIN28B
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MATR3
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MBNL1
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MBNL2
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MBNL3
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MEX3B
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MEX3C
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MEX3D
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MSI1
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MSI2
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NCL
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NONO
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NOVA2
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PABPC1
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PABPC1L
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PABPC3
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PABPC4
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PABPC5
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PABPN1
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PABPN1L
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PCBP1
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PCBP2
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PCBP3
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PCBP4
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PPRC1
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PSPC1
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PTBP1
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PTBP2
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QKI
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RALY
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RBFOX2
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RBFOX3
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RBM24
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RBM28
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RBM3
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RBM38
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RBM4
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RBM41
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RBM42
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RBM45
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RBM46
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RBM47
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RBM4B
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RBM5
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RBM6
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RBM8A
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RBMS1
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RBMS2
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RBMS3
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RBMX
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RBMXL1
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RBMXL2
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RBMXL3
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RBMY1A1
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RBMY1B
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RBMY1D
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RBMY1E
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RBMY1F
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RBMY1J
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ROD1
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SAMD4A
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SAMD4B
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SART3
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SF3B4
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SFPQ
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SNRNP70
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SNRPA
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SNRPB2
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SRSF1
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SRSF12
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SRSF2
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SRSF3
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SRSF4
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SRSF6
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SRSF7
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SRSF9
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STAR-PAP
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SYNCRIP
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TAF15
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TARDBP
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TIA1
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U2AF2
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YB-1
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YBX2
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YTHDC1
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ZC3H10
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ZCRB1
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ZFP36
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ZFP36L1
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ZFP36L2
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ZNF638
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Selected RBP:PWM(s):

Or, upload a PWM in CIS-BP format. sample 1; sample 2

      RBP sequence (fasta format only for ONE sequence) Example

    


OPTIONAL

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