HACER: Human ACtive Enhancer to interpret Regulatory variants
Center for Quantitative Sciences at Vanderbilt University Medical Center

Data format.

All the date sets here are in the same format. Please see the details here.



GRO-seq cells

A375 A549 AC16 CyT49 GM12004
GM12750 GM12878 H1_ESCs HAEC HCT116
HEK293 Hela HelaS3 HUVEC IMR90
K562 LNCaP MCF10A MCF7 Nalm6
REH U2OS


PRO-seq cells

AML CD4 Daudi GM12004 Jurkat
K562 Kasumi-1 Ly-1 MV4-11 U936


CAGE cells

10964C 143B 15242A 15425 1B2C6 1C3D3 1C3IKEI 2C6
5637 8305C 8505C A172 A431 A549 ACC-MESO-1 ACC-MESO-4
ARH-77 ATN-1 AZ521 BALL-1 BeWo Ca9-22 CACO-2 Ca Ski
ChaGo-K-1 CHP-134 COBL-a COLO-320 COLO 679 CTB-1 D283 Med D98-AH2
DAUDI Detroit 562 DJM-1 DMS 144 DS-1 DU145 EBC-1 ECC10
ECC12 ECC4 EC-GI-10 EEB EoL-1 EoL-3 F-36E F-36P
FHs 74 Int FKH-1 FU-RPNT-1 FU-RPNT-2 G-361 G-401 G-402 GCT TIB-223
GI-1 GM12878 ENCODE GSS HCC1806 HCSC-1 HD-Mar2 HEK293 HelaS3 ENCODE
H-EMC-SS HepG2 ENCODE HEPM HFWT HGRT HIRS-BM HKA-1 HKBMM
HL60 HNT-34 HO-1-u-1 HOKUG HPB-ALL Hs 132.T Hs 53.T Hs 5.T
Hs 706.T Hs 769.T Hs 863.T Hs 925.T HSC-3 HS-ES-1 HS-ES-2R HSKTC
HS-Os-1 HS-PSS HSQ-89 HS-SY-II HT-1080 HTMMT HTOA HTST
Hu5 HuCCT1 HuH-28 HuH-6 HuT 102 TIB-162 HYT-1 IA-LM IM95m
ITO-II JHOC-5 JHOM-1 JHOS-2 JHUCS-1 JHUEM-1 JHUS-nk1 JMSU1
Jurkat K562 ENCODE K562 Kasumi-1 Kasumi-3 Kasumi-6 Kato III KCL-22
KG-1 KGN KHM-5M KHYG-1 Ki-JK KLM-1 KMLS-1 KNS-62
KU812 KU-SN KYM-1 LC-1F Li-7 LI90 LK-2 LU65
Lu99B MCAS MCF7 MDA-MB-453 ME-180 MEG-01 MEG-A2 Mero-14
Mero-25 Mero-41 Mero-48a Mero-82 Mero-83 Mero-84 Mero-95 MFH-ino
MIA Paca2 MKL-1 MKN1 MKN45 MKPL-1 MLMA M-MOK Mo
MS-1 MV-4-11 NALM-6 NB-1 NBsusSR NCC-IT-A3 NCI-H1385 NCI-H1770
NCI-H2052 NCI-H226 NCI-H2452 NCI-H28 NCI-H358 NCI-H441 NCI-H460 NCI-H650
NCI-H727 NCI-H82 NCR-G1 NEC14 NEC15 NEC8 NH-12 NKM-1
NMFH-1 No36 NOMO-1 NOR-P1 NUGC-4 OMC-2 OMC-9 ONE58
ONS-76 OS-RC-2 P30 P31 PA-1 PC-14 PC-3 PCM6
QGP-1 RAJI RERF-LC-AI RMS-YM RPMI1788 RPMI 2650 Saos-2 SAS
SCH SKG-II-SF SKM-1 SK-N-MC SK-OV-3-R SK-PN-DW SKW-3 SLVL
SNU-387 SRA 01 StromaNKtert SUIT-2 SW 1353 SW-13 SW 1573 SW 872
T3M-3 T3M-5 T98G TASK1 TCO-1 TC-YIK TE 354.T TEN
TFK-1 TGBC14TKB TGBC18TKB TGBC2TKB THP-1 TM-31 TT1TKB TUHR10TKB
Ty-82 U-937 DE-4 WA-hT WIL2-NS XPL 17 Y79


All enhancers

HACER-enhancers.txt